Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004682.1 Kokia drynarioides strain JFW-HI SEQ_118233, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 611

Length: 1019
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.37


Found at i:376 original size:20 final size:20

Alignment explanation


    Indices: 351--393  Score: 61
    Period size: 20  Copynumber: 2.1  Consensus size: 20

        341 AATATTGAAC

                                 
        351 TTTCAAAAAAATATTTT-TTT
          1 TTTCAAAAAAAT-TTTTATTT

                     *          
        371 TTTCAAAAACATTTTTATTT
          1 TTTCAAAAAAATTTTTATTT

               
        391 TTT
          1 TTT

        394 TATTTTTAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  19    4  0.19
  20   17  0.81

ACGTcount: A:0.35, C:0.07, G:0.00, T:0.58


Consensus pattern (20 bp):   
TTTCAAAAAAATTTTTATTT

Done.