Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004684.1 Kokia drynarioides strain JFW-HI SEQ_118235, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3739
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.34


Found at i:3407 original size:3 final size:3

Alignment explanation


    Indices: 3399--3425  Score: 54
    Period size: 3  Copynumber: 9.0  Consensus size: 3

       3389 TAAAAAGCAA

                                               
       3399 AAT AAT AAT AAT AAT AAT AAT AAT AAT
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT

       3426 TTATAAAACA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   24  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
AAT

Done.