Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004688.1 Kokia drynarioides strain JFW-HI SEQ_118242, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2151
ACGTcount: A:0.41, C:0.12, G:0.08, T:0.39


Found at i:418 original size:26 final size:26

Alignment explanation


    Indices: 368--424  Score: 64
    Period size: 26  Copynumber: 2.2  Consensus size: 26

        358 ATCCAAATTG

                                     *
        368 TAAATAATTATATTAATTATATATGT
          1 TAAATAATTATATTAATTATATATGA

                                  *     
        394 TAAATAA-TA-ATTACATATATTTATGA
          1 TAAATAATTATATTA-AT-TATATATGA

                 
        420 TAAAT
          1 TAAAT

        425 CACTAACCCA


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  24    4  0.15
  25    4  0.15
  26   19  0.70

ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46


Consensus pattern (26 bp):   
TAAATAATTATATTAATTATATATGA

Found at i:1597 original size:26 final size:26

Alignment explanation


    Indices: 1547--1603  Score: 64
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       1537 ATCCAAATTG

                                     *
       1547 TAAATAATTATATTAATTATATATGT
          1 TAAATAATTATATTAATTATATATGA

                                  *     
       1573 TAAATAA-TA-ATTACATATATTTATGA
          1 TAAATAATTATATTA-AT-TATATATGA

                 
       1599 TAAAT
          1 TAAAT

       1604 CACTAACCCA


Statistics
Matches: 27,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
  24    4  0.15
  25    4  0.15
  26   19  0.70

ACGTcount: A:0.49, C:0.02, G:0.04, T:0.46


Consensus pattern (26 bp):   
TAAATAATTATATTAATTATATATGA
Done.