Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004689.1 Kokia drynarioides strain JFW-HI SEQ_118244, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 851

Length: 1419
ACGTcount: A:0.37, C:0.19, G:0.17, T:0.27


Found at i:44 original size:19 final size:20

Alignment explanation


    Indices: 20--59  Score: 64
    Period size: 20  Copynumber: 2.0  Consensus size: 20

         10 AAATTTATTT

                                
         20 ACAT-AATGTCCAATTACAA
          1 ACATAAATGTCCAATTACAA

                         *      
         39 ACATAAATGTCCAGTTACAA
          1 ACATAAATGTCCAATTACAA

             
         59 A
          1 A

         60 TCAAGTTCAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  19    4  0.21
  20   15  0.79

ACGTcount: A:0.47, C:0.20, G:0.07, T:0.25


Consensus pattern (20 bp):   
ACATAAATGTCCAATTACAA

Done.