Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004694.1 Kokia drynarioides strain JFW-HI SEQ_118253, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1672
ACGTcount: A:0.38, C:0.16, G:0.12, T:0.34


Found at i:1362 original size:30 final size:30

Alignment explanation


    Indices: 1294--1364  Score: 81
    Period size: 30  Copynumber: 2.3  Consensus size: 30

       1284 TGAATAGTTT

                      *         *  *       
       1294 ATATATTTATAATTTTTAAATAATTAAATTA
          1 ATAT-TTTATTATTTTTAAAAAACTAAATTA

              *                           
       1325 ATTTTTTATTATTTTTAAAAAACTAAATT-
          1 ATATTTTATTATTTTTAAAAAACTAAATTA

                       
       1354 ATAATTTTATT
          1 AT-ATTTTATT

       1365 TTTACTAATT


Statistics
Matches: 34,  Mismatches: 5, Indels: 3
        0.81            0.12        0.07

Matches are distributed among these distances:
  29    2  0.06
  30   29  0.85
  31    3  0.09

ACGTcount: A:0.44, C:0.01, G:0.00, T:0.55


Consensus pattern (30 bp):   
ATATTTTATTATTTTTAAAAAACTAAATTA
Done.