Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004695.1 Kokia drynarioides strain JFW-HI SEQ_118254, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 820

Length: 1368
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.25


Found at i:636 original size:3 final size:3

Alignment explanation


    Indices: 628--670  Score: 77
    Period size: 3  Copynumber: 14.3  Consensus size: 3

        618 TATTACAATA

                                     *                               
        628 AAT AAT AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT AAT A
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A

        671 TTATTATTAT


Statistics
Matches: 38,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   3   38  1.00

ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33


Consensus pattern (3 bp):   
AAT

Done.