Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004696.1 Kokia drynarioides strain JFW-HI SEQ_118255, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 979

Length: 1632
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31


Found at i:252 original size:25 final size:25

Alignment explanation


    Indices: 216--270  Score: 62
    Period size: 25  Copynumber: 2.2  Consensus size: 25

        206 TTATTCCTAC

                                       
        216 AGAAAACTAAAGA-AAACAAGTTAAA-
          1 AGAAAACTAAAGACAAA-AAG-TAAAT

                                      
        241 AGAAAA-TAAAAGACAAAAAGTAAAT
          1 AGAAAACT-AAAGACAAAAAGTAAAT

                 
        266 AGAAA
          1 AGAAA

        271 GATTGCAATG


Statistics
Matches: 27,  Mismatches: 0, Indels: 6
        0.82            0.00        0.18

Matches are distributed among these distances:
  24    5  0.19
  25   19  0.70
  26    3  0.11

ACGTcount: A:0.71, C:0.05, G:0.13, T:0.11


Consensus pattern (25 bp):   
AGAAAACTAAAGACAAAAAGTAAAT
Done.