Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004698.1 Kokia drynarioides strain JFW-HI SEQ_118260, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 870

Length: 1451
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35


Found at i:1279 original size:61 final size:61

Alignment explanation


    Indices: 1184--1307  Score: 248
    Period size: 61  Copynumber: 2.0  Consensus size: 61

       1174 AAATAAAATG

                                                                         
       1184 AGATAAATAAGATGAGAAAAGAGGCAATAAGGAAAAGGTAAAAATTAAGTTTTATTTATTT
          1 AGATAAATAAGATGAGAAAAGAGGCAATAAGGAAAAGGTAAAAATTAAGTTTTATTTATTT

                                                                         
       1245 AGATAAATAAGATGAGAAAAGAGGCAATAAGGAAAAGGTAAAAATTAAGTTTTATTTATTT
          1 AGATAAATAAGATGAGAAAAGAGGCAATAAGGAAAAGGTAAAAATTAAGTTTTATTTATTT

              
       1306 AG
          1 AG

       1308 GATTAATTTG


Statistics
Matches: 63,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  61   63  1.00

ACGTcount: A:0.51, C:0.02, G:0.20, T:0.27


Consensus pattern (61 bp):   
AGATAAATAAGATGAGAAAAGAGGCAATAAGGAAAAGGTAAAAATTAAGTTTTATTTATTT
Done.