Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004702.1 Kokia drynarioides strain JFW-HI SEQ_118264, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 895

Length: 1492
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:484 original size:6 final size:6

Alignment explanation


    Indices: 473--523  Score: 66
    Period size: 6  Copynumber: 8.5  Consensus size: 6

        463 TGATCAAAAT

                                         *          *   *  *       
        473 TGAAAG TGAAAG TGAAAG TGAAAG TAAAAG TGAAAT TGGAAT TGAAAG
          1 TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG TGAAAG

               
        521 TGA
          1 TGA

        524 TATGAATTGT


Statistics
Matches: 39,  Mismatches: 6, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
   6   39  1.00

ACGTcount: A:0.49, C:0.00, G:0.29, T:0.22


Consensus pattern (6 bp):   
TGAAAG

Done.