genome.fa.s4709.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004709.1 Kokia drynarioides strain JFW-HI SEQ_118278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185400

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16271--16301	2	15.5	2	100	0	62	0	48	0	51	1.00
28647--28684	13	3.0	13	88	3	51	89	7	2	0	0.57
28842--28929	42	2.0	43	85	8	117	43	2	14	39	1.58
29681--29714	18	2.0	17	88	11	52	17	20	0	61	1.34
32548--32604	29	1.9	30	85	3	80	33	3	3	59	1.31
37590--37619	2	15.0	2	100	0	60	50	0	0	50	1.00
38889--38947	21	3.0	20	74	16	52	66	0	0	33	0.92
38889--38930	20	2.1	20	82	8	50	61	0	0	38	0.96
42212--42268	29	1.9	29	85	3	78	52	12	1	33	1.49
44168--44201	17	2.0	17	94	0	59	14	5	5	73	1.21
44443--44475	2	16.5	2	100	0	66	0	48	0	51	1.00
44461--44797	180	1.9	181	94	0	595	36	22	5	35	1.77
46086--46435	194	1.8	193	86	1	513	26	26	19	27	1.99
52642--52670	2	14.5	2	100	0	58	51	0	0	48	1.00
54701--54831	40	3.3	40	78	4	165	25	20	23	29	1.99
54700--54855	80	2.0	80	90	0	249	25	17	25	30	1.97
54701--54855	40	3.9	39	74	8	141	25	18	25	30	1.98
73413--73449	3	12.3	3	100	0	74	32	0	0	67	0.91
84939--84964	11	2.4	11	100	0	52	30	46	0	23	1.53
86722--86787	19	3.5	19	77	8	64	53	7	1	37	1.39
87035--87094	31	2.0	31	83	3	77	30	21	6	41	1.79
117447--117652	30	6.9	29	73	12	118	35	20	0	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117447--117642	59	3.3	59	80	5	191	36	20	1	41	1.60
117544--117672	60	2.2	60	83	5	163	35	20	0	42	1.58
117544--117672	30	4.3	30	83	11	142	35	20	0	42	1.58
117528--117721	90	2.2	89	79	7	223	36	21	3	39	1.71
121372--121414	22	2.0	22	81	9	52	37	11	0	51	1.39
125972--126308	81	4.2	81	92	1	550	22	20	20	36	1.96
126330--126647	84	3.8	83	79	8	322	21	20	16	42	1.89
126301--126647	168	2.1	168	82	5	407	21	21	16	41	1.90
126349--126693	168	2.1	168	79	4	356	20	22	15	41	1.90
130075--130125	27	1.9	27	88	4	77	49	7	3	39	1.51
130214--130243	16	1.9	16	93	6	53	70	6	0	23	1.11
130366--130432	31	2.2	31	88	0	98	37	8	14	38	1.78
130865--130908	15	2.7	17	93	6	74	25	0	0	75	0.81
131643--131814	58	3.0	60	83	6	212	55	8	7	28	1.58
131725--131813	27	3.1	27	71	25	76	58	6	6	28	1.49
141861--141904	16	2.6	16	82	7	52	38	2	0	59	1.10
143455--143488	17	2.0	17	88	0	50	47	0	0	52	1.00
150524--150573	24	2.0	25	81	11	59	36	10	10	44	1.72
150543--150606	23	2.7	23	80	2	74	37	12	14	35	1.83
153606--153649	10	4.4	10	79	0	52	0	13	2	84	0.73
156341--156560	30	7.5	28	78	9	160	35	4	26	33	1.77
156362--156524	29	5.6	29	82	8	197	33	4	28	33	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156362--156560	59	3.4	59	78	12	196	33	4	27	34	1.77
156362--156539	30	6.0	29	80	10	177	32	4	28	34	1.77
157674--157758	3	28.3	3	70	13	50	35	4	2	57	1.32
157689--157757	24	2.8	25	80	10	72	34	5	2	56	1.38
159910--159966	2	28.5	2	100	0	114	50	0	0	49	1.00
161093--161133	12	3.3	13	73	13	50	58	0	2	39	1.11
164003--164189	41	4.5	41	79	5	171	24	25	11	39	1.88
163997--164189	82	2.3	83	78	5	201	24	25	11	38	1.89
164989--165036	22	2.2	21	77	3	51	35	14	0	50	1.44
177455--177507	24	2.2	24	89	0	79	22	24	15	37	1.92

Tables:   1

The End!