Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004710.1 Kokia drynarioides strain JFW-HI SEQ_118279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3078
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.29


Found at i:1936 original size:21 final size:21

Alignment explanation


    Indices: 1910--1950  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       1900 TAGGGTCCAT

                         *       
       1910 TTGCCCCGGAGGAGTAGAGTC
          1 TTGCCCCGGAGGAATAGAGTC

                  *             
       1931 TTGCCCGGGAGGAATAGAGT
          1 TTGCCCCGGAGGAATAGAGT

       1951 ATCGCGATGG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.22, C:0.20, G:0.39, T:0.20


Consensus pattern (21 bp):   
TTGCCCCGGAGGAATAGAGTC

Found at i:2077 original size:45 final size:45

Alignment explanation


    Indices: 1947--2083  Score: 177
    Period size: 45  Copynumber: 3.0  Consensus size: 45

       1937 GGGAGGAATA

                  *   *              *               **   
       1947 GAGTATCGCGATGGCTCGTCAAACTCA-GCTTGATATCCTTCCCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGC-TGATATCCTTGACTT

                   *               *  *                  
       1992 GAGTATTACGGTGGCTCGTCAAATTGTGGCTGATATCCTTGACTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGACTT

                                                     *   
       2037 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGGCTT
          1 GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGACTT

              
       2082 GA
          1 GA

       2084 TGAGCTATGC


Statistics
Matches: 79,  Mismatches: 12, Indels: 2
        0.85            0.13        0.02

Matches are distributed among these distances:
  45   77  0.97
  46    2  0.03

ACGTcount: A:0.20, C:0.22, G:0.26, T:0.32


Consensus pattern (45 bp):   
GAGTATTGCGGTGGCTCGTCAAACTGAGGCTGATATCCTTGACTT
Done.