Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004714.1 Kokia drynarioides strain JFW-HI SEQ_118284, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2865
ACGTcount: A:0.35, C:0.17, G:0.18, T:0.29


Found at i:1974 original size:16 final size:16

Alignment explanation


    Indices: 1953--1988  Score: 56
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1943 TCACCATCTT

                             
       1953 GAAAAAAGAAAAAA-AA
          1 GAAAAAA-AAAAAAGAA

                            
       1969 GAAAAAAAAAAAAGAA
          1 GAAAAAAAAAAAAGAA

                
       1985 GAAA
          1 GAAA

       1989 CAATAGGAGA


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  15    6  0.32
  16   13  0.68

ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00


Consensus pattern (16 bp):   
GAAAAAAAAAAAAGAA

Found at i:1979 original size:13 final size:14

Alignment explanation


    Indices: 1956--1984  Score: 51
    Period size: 13  Copynumber: 2.1  Consensus size: 14

       1946 CCATCTTGAA

                          
       1956 AAAAGAAAAAAAAG
          1 AAAAGAAAAAAAAG

                          
       1970 AAAA-AAAAAAAAG
          1 AAAAGAAAAAAAAG

              
       1983 AA
          1 AA

       1985 GAAACAATAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13   11  0.73
  14    4  0.27

ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00


Consensus pattern (14 bp):   
AAAAGAAAAAAAAG
Done.