Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004715.1 Kokia drynarioides strain JFW-HI SEQ_118287, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7357
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.32


Found at i:381 original size:36 final size:36

Alignment explanation


    Indices: 334--405  Score: 144
    Period size: 36  Copynumber: 2.0  Consensus size: 36

        324 GCATCCTAGA

                                                
        334 AAATTATGCTCCAGATGGTCAGGGTCATTCAAAGTT
          1 AAATTATGCTCCAGATGGTCAGGGTCATTCAAAGTT

                                                
        370 AAATTATGCTCCAGATGGTCAGGGTCATTCAAAGTT
          1 AAATTATGCTCCAGATGGTCAGGGTCATTCAAAGTT

        406 GTCGAAGCAT


Statistics
Matches: 36,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   36  1.00

ACGTcount: A:0.31, C:0.17, G:0.22, T:0.31


Consensus pattern (36 bp):   
AAATTATGCTCCAGATGGTCAGGGTCATTCAAAGTT
Done.