Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004722.1 Kokia drynarioides strain JFW-HI SEQ_118297, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4711
ACGTcount: A:0.36, C:0.18, G:0.18, T:0.28


Found at i:2307 original size:69 final size:69

Alignment explanation


    Indices: 2223--2360  Score: 276
    Period size: 69  Copynumber: 2.0  Consensus size: 69

       2213 GAGCATCTAG

                                                                             
       2223 ATTTTGGAAGAAAGTTGTAGGTAAGACTCCATTAAATTCATTCCCAGAGAGATCAACAATATGCA
          1 ATTTTGGAAGAAAGTTGTAGGTAAGACTCCATTAAATTCATTCCCAGAGAGATCAACAATATGCA

                
       2288 ATGA
         66 ATGA

                                                                             
       2292 ATTTTGGAAGAAAGTTGTAGGTAAGACTCCATTAAATTCATTCCCAGAGAGATCAACAATATGCA
          1 ATTTTGGAAGAAAGTTGTAGGTAAGACTCCATTAAATTCATTCCCAGAGAGATCAACAATATGCA

                
       2357 ATGA
         66 ATGA

       2361 TGAAAAGGAT


Statistics
Matches: 69,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  69   69  1.00

ACGTcount: A:0.39, C:0.14, G:0.19, T:0.28


Consensus pattern (69 bp):   
ATTTTGGAAGAAAGTTGTAGGTAAGACTCCATTAAATTCATTCCCAGAGAGATCAACAATATGCA
ATGA
Done.