Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004723.1 Kokia drynarioides strain JFW-HI SEQ_118298, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 855

Length: 1425
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.33


Found at i:211 original size:29 final size:30

Alignment explanation


    Indices: 159--232  Score: 96
    Period size: 31  Copynumber: 2.4  Consensus size: 30

        149 TTTGAATCAC

                            *  *           
        159 AATTAAAGTTTCATGTGTATAATTAC-ACTA
          1 AATTAAAG-TTCATGTATACAATTACAACTA

                                        *  
        189 AATTAAAGTTCATGTATACAATTACATATTA
          1 AATTAAAGTTCATGTATACAATTACA-ACTA

                         
        220 AATTAAAGTTCAT
          1 AATTAAAGTTCAT

        233 ATATTATTTT


Statistics
Matches: 39,  Mismatches: 3, Indels: 3
        0.87            0.07        0.07

Matches are distributed among these distances:
  29   15  0.38
  30    8  0.21
  31   16  0.41

ACGTcount: A:0.43, C:0.09, G:0.08, T:0.39


Consensus pattern (30 bp):   
AATTAAAGTTCATGTATACAATTACAACTA

Done.