genome.fa.s4724.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004724.1 Kokia drynarioides strain JFW-HI SEQ_118301, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113866

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3255--3373	49	2.4	49	83	5	132	16	31	13	37	1.88
4242--4272	4	7.8	4	92	0	53	3	19	0	77	0.90
11364--11412	21	2.3	21	89	6	73	34	26	8	30	1.86
11592--11631	21	1.9	21	84	0	53	35	20	20	25	1.96
12165--12275	50	2.2	51	83	4	143	36	21	15	27	1.93
12150--12275	25	5.0	25	76	5	110	34	22	15	26	1.94
17615--17672	14	4.3	13	76	6	53	63	0	27	8	1.23
18649--18692	15	3.0	15	86	3	54	40	9	0	50	1.34
18665--18717	15	3.5	15	86	0	70	30	11	0	58	1.33
24858--24893	18	2.0	18	89	10	56	22	13	2	61	1.46
28443--28510	22	3.1	22	76	0	64	54	10	16	19	1.70
31784--31842	29	2.0	29	83	3	73	38	1	6	52	1.38
33259--33348	18	5.0	17	69	20	58	40	1	2	56	1.19
33288--33340	17	2.9	17	78	18	54	39	1	0	58	1.09
33259--33338	37	2.2	35	86	8	108	40	1	1	57	1.15
37647--37699	15	3.6	15	84	5	72	39	1	1	56	1.21
38217--38259	14	3.0	15	86	10	63	74	11	11	2	1.17
38217--38275	14	4.1	14	75	14	57	74	11	11	1	1.15
39273--39410	31	4.6	31	71	14	96	26	13	2	58	1.46
39436--39473	17	2.3	17	90	4	60	23	13	2	60	1.45
42174--42232	24	2.6	24	82	15	72	33	27	11	27	1.92
42761--42852	41	2.2	41	80	3	96	20	20	13	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42856--43061	42	4.9	42	79	5	193	28	26	11	33	1.91
48282--48331	12	4.5	12	78	19	63	78	0	22	0	0.76
48282--48331	6	8.0	6	78	8	55	78	0	22	0	0.76
48657--48710	27	2.0	27	82	7	65	27	9	9	53	1.63
49306--49415	50	2.2	50	80	4	123	37	14	20	27	1.92
49532--49714	99	1.9	98	82	5	235	37	19	18	24	1.94
49583--49769	99	1.9	100	80	7	220	34	20	18	26	1.96
49828--49971	40	3.5	40	86	1	180	35	25	13	25	1.93
49859--50008	40	3.7	40	80	5	149	37	21	13	28	1.91
49999--50251	47	5.4	47	81	3	278	37	24	11	26	1.89
49999--50266	93	2.9	92	80	3	288	37	23	13	26	1.91
49999--50268	139	1.9	141	84	3	366	37	23	12	26	1.91
49952--50266	47	6.9	46	75	10	211	36	22	13	27	1.91
50537--50569	11	2.9	11	95	4	57	81	9	0	9	0.87
50831--50869	15	2.6	14	88	11	60	76	10	12	0	1.01
51933--52092	30	5.8	27	74	18	98	25	10	0	63	1.31
51944--52038	29	3.4	29	80	9	99	28	11	1	58	1.39
51932--52038	29	3.9	27	77	12	92	28	11	0	59	1.37
52637--52670	13	2.6	13	90	0	50	23	20	8	47	1.78
60991--61046	17	3.3	17	80	9	69	19	19	8	51	1.73
61613--61646	17	2.1	16	88	5	50	76	0	23	0	0.79
66548--66591	23	1.9	23	85	0	61	34	2	4	59	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66834--66904	26	2.9	23	71	23	56	60	1	28	9	1.37
74219--74286	34	2.0	34	100	0	136	17	29	14	38	1.90
87684--87729	23	2.0	23	100	0	92	30	13	21	34	1.91
89581--89611	10	3.1	10	100	0	62	9	9	0	80	0.90
89585--89627	17	2.5	17	78	17	52	4	13	0	81	0.84
89583--89638	27	2.1	27	83	12	71	5	14	0	80	0.88
100051--100104	28	1.9	28	92	0	90	14	11	29	44	1.80
103391--103535	29	4.9	30	77	4	123	50	8	17	22	1.74
104422--104490	34	2.0	34	85	2	93	47	17	2	31	1.62
105051--105113	3	21.0	3	100	0	126	66	0	0	33	0.92
106355--106497	29	4.8	28	75	11	97	50	10	14	24	1.74
106315--106466	62	2.5	62	82	2	180	53	8	13	24	1.68
106892--106948	27	2.2	26	90	3	87	38	3	19	38	1.69
107081--107339	131	2.0	128	82	6	317	24	22	17	35	1.95
112628--112745	30	4.0	29	78	18	109	33	3	28	34	1.74

Tables:   1

The End!