Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004726.1 Kokia drynarioides strain JFW-HI SEQ_118303, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4792
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36


Found at i:968 original size:17 final size:17

Alignment explanation


    Indices: 946--978  Score: 66
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        936 TTATATTTTT

                             
        946 ATACAATTAATAATTTC
          1 ATACAATTAATAATTTC

                            
        963 ATACAATTAATAATTT
          1 ATACAATTAATAATTT

        979 TAGTTTTAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   16  1.00

ACGTcount: A:0.48, C:0.09, G:0.00, T:0.42


Consensus pattern (17 bp):   
ATACAATTAATAATTTC

Found at i:4067 original size:15 final size:16

Alignment explanation


    Indices: 4047--4081  Score: 54
    Period size: 15  Copynumber: 2.2  Consensus size: 16

       4037 AGAACTCAAC

                            
       4047 AAATATTTTTCT-TTT
          1 AAATATTTTTCTGTTT

                      *     
       4062 AAATATTTTTTTGTTT
          1 AAATATTTTTCTGTTT

                
       4078 AAAT
          1 AAAT

       4082 TAATTTTTAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15   11  0.61
  16    7  0.39

ACGTcount: A:0.31, C:0.03, G:0.03, T:0.63


Consensus pattern (16 bp):   
AAATATTTTTCTGTTT

Done.