Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004727.1 Kokia drynarioides strain JFW-HI SEQ_118304, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 698

Length: 1164
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31


Found at i:892 original size:13 final size:13

Alignment explanation


    Indices: 874--907  Score: 68
    Period size: 13  Copynumber: 2.6  Consensus size: 13

        864 AACAGCATTG

                         
        874 CAGAACGAATGAA
          1 CAGAACGAATGAA

                         
        887 CAGAACGAATGAA
          1 CAGAACGAATGAA

                    
        900 CAGAACGA
          1 CAGAACGA

        908 TCATGGAGAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   21  1.00

ACGTcount: A:0.53, C:0.18, G:0.24, T:0.06


Consensus pattern (13 bp):   
CAGAACGAATGAA
Done.