Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004737.1 Kokia drynarioides strain JFW-HI SEQ_118319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 12610
ACGTcount: A:0.30, C:0.18, G:0.16, T:0.37
Found at i:1001 original size:432 final size:431
Alignment explanation
Indices: 7--2306 Score: 2855
Period size: 432 Copynumber: 5.3 Consensus size: 431
1 TGAGAC
** ** * * **
7 TTGTTTCTCTTTTGGTTCTTGGATAAACTTATGAGCTTGTCAAAATAATACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * * * *
72 CTTCGATTCCTTACAGTGTTCAAAACGATCCATTCCTTTGAGCAATATTTCGAGCATTCGATGCT
66 CTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
** *
137 CGGGAAATCGCATCATTTGGTCCAAACGGTTTGTCATTTTTGTAAA-AACTTTTGGCCTTTGAAT
131 CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAAT
* * * * *
201 TTAAAACTTATTTGCATCAGATTGTTTCTCTTTTGGTTCTTGGACGAACTTATGAACTTGT-GAA
195 TAAAAACTTATTTACGTCAGATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCGAA
* *
265 ACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTGCTTTGAGC
260 ACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAGC
* * *
330 AATTTTTCGAGCATTCCATGCTCAGGGAAATCGCATCGTTTGGTCCAAAATAGTTTGTCATTTTG
325 AATTTTTCGAACATTCCATGCTTA-GGAAATCGCATCATTTGGTCC-AAATAGTTTGTCA-TTTG
395 TAAACAACTTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAA
387 TAAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAA
* * * * * *
441 TTGTATCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAATTTTTCAAGTTATTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * *
506 CTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGTAATTTTTTGAACATTCCATGCT
66 CTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * * * * *
571 TGGGAAATCGCATCTTTTGGTCCAAATAGTTTGTCA-TCTATAAACATCTTTTGGTTTTTAAATT
131 CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
635 AAAAACTTATTTACGTGAGACTTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCGAA
196 AAAAACTTATTTACGTCAGA-TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCGAA
* * *
700 A-TGTTT-CGAGTTCTTTTATGACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCATTTGAG
260 ACT-TTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAG
* * * * * * *
763 CTATTTTTCGAGCATTCCATGCTTAGCAAATCACAACAATTGGTCCAAAATAGTTTGTCATTCGT
324 CAATTTTTCGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTGT
* *
828 AAACAACTTTTTGGTTTTTGAATTAAATACTTATTTACGTCAGAA
388 AAACAAC-TTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAA
* * * *
873 TTGTTTCTGTTTTGGTTCTTGGACGAACTTCCAAACTTGTTAAACTTTTAC-AGGTTATTTTATA
1 TTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGA-GTTCTTTTATA
* *
937 ACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCATTTTTCGAACATTCCATGC
65 ACTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
1002 TCGGGAAATCGCATCATTTGGTCCAAAT-GCTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
130 TCGGGAAATCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* * *
1066 TTTAAAACTTATTTACGTCAGATCGTTTCTCTTTTGGTTCTTGGATGAACTTATGAACTTGT-GA
194 TTAAAAACTTATTTACGTCAGATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCGA
* * ** *
1130 AACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAATATTCAGGACTATCCATTCCTTCGAG
259 AACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAG
* * *
1195 TAATTTTTCGAACATTCCATGCTTGGGAAATCGCATTATTTGGTCCAAATAGTTTGTCATTTGTA
324 CAATTTTTCGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTA
* * * * *
1260 AACAACTTTTGGT-TTTTAAATAAAAACCTTATTTAAGTGAGAC
389 AACAACTTTTGGTCTTTGAATTAAAAA-CTTATTTACGTCAGAA
* * * * *
1303 TTGTTTCTCTTTTGGTTCTTGGAAGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * * *
1368 CTTCGATTCCTTAAAGTATTCAAAACAATCCATTCTTTTGAGCAATTTTTCGAGCTTTCCATGCT
66 CTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * *
1433 CAGGAAATCGCACCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTAAATT
131 CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * * * *
1498 AAAAACTTATTTAAGTGAGACTTGTTTCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTC-AA
196 AAAAACTTATTTACGTCAGA-TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCGAA
* ** * *
1562 ACTTTTACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCATGATGATCCATTCCTTCAAGC
260 ACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAG-
* *
1627 CAATTTTT-GAACATTCCATGCTTGGGAAATCGCATCATTTGGTCCAAATGGTTTGTCATTTTGT
324 CAATTTTTCGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGT
* *
1691 AAACAACTTTTGGTCTTTGAATTTAAAACTTATTTACGTTAGAA
388 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAA
* ** * *
1735 TTGTTTCTCTTTTGGTTCTTGGATGAACTTATGAACTTGTGAAGCTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* *
1800 CTTTGGTTCCTTAAAGTATTCAAGACGATGCATTCCTTCGAGCTA-TTTTCTGAACATTCCATGC
66 CTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGC
* * ** * * *
1864 TTGGGTAATCTAATCATTTTGTCCAAATAGTTTGTCAATTTGTGAACAACTTTTGGTCTTTGAAT
130 TCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * * *
1929 TAAAAACTTATTTTCATCAGAATTGTTTCTCTATTGGTTCTTGGATGAACTTTCGAACTTGTC-A
195 TAAAAACTTATTTACGTCAG-ATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCGA
* * *
1993 AACTTTTACAAGTTCTTTTATAA-TTCGATTCCTTAAAGTA-T------GATCTATTCCTTCGAG
259 AACTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAG
* * * * *
2050 CAATTTTTTGAACATTCAATAC-TCGAGAAATCGCATCATTTGGTCCAAATGGTTTGTCATTTGT
324 CAATTTTTCGAACATTCCATGCTTAG-GAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGT
* * * ** *
2114 AAACAACTTTTGATCTTTAAATTAAAAACTTAGTTAAATGAGAA
388 AAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAA
* * * * *
2158 TTGTTTCGCTCTTGGTTCTTGAATGAACTTCCGAACTTGTCAAACTATTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
2223 CTTTGACTT-CTTAGAGTATTCAAGACGATCCATTCCTTTGAGAAATTTTTCGAACATTCCATGC
66 CTTTG-GTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* **
2287 TCAGGAAATCATATCATTTG
130 TCGGGAAATCGCATCATTTG
2307 TGATGCGAGC
Statistics
Matches: 1627, Mismatches: 216, Indels: 57
0.86 0.11 0.03
Matches are distributed among these distances:
423 172 0.11
424 65 0.04
429 10 0.01
430 206 0.13
431 199 0.12
432 602 0.37
433 113 0.07
434 253 0.16
435 7 0.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (431 bp):
TTGTTTCTCTTTTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
CTTTGGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
AAAAACTTATTTACGTCAGATTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCGAAA
CTTTTACGAGTTCTTTTATAACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCCTTCGAGCA
ATTTTTCGAACATTCCATGCTTAGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAA
CAACTTTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAA
Found at i:1646 original size:216 final size:216
Alignment explanation
Indices: 7--2306 Score: 2832
Period size: 215 Copynumber: 10.7 Consensus size: 216
1 TGAGAC
* * * * **
7 TTGTTTCTCTTTTGGTTCTTGGATAAACTTATGAGCTTGTCAAAATAATACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * * *
72 CTTCGATTCCTTACAGTGTTCAAAACGATCCATTCCTTTGAGCAATATTTCGAGCATTCGATGCT
66 CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
** *
137 CGGGAAATCGCATCATTTGGTCCAAACGGTTTGTCATTTTTGTAAA-AACTTTTGGCCTTTGAAT
131 CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTTGTAAACAACTTTTGGTCTTTGAAT
* *
201 TTAAAACTTATTTGCA-TCAG-A
195 TAAAAACTTATTT-AAGTCAGAA
* * *
222 TTGTTTCTCTTTTGGTTCTTGGACGAACTTATGAACTTGTGAAACTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
287 CTTTGATTCCTTAAAGTATTCAAAACGATCCATTGCTTTGAGCAATTTTTCGAGCATTCCATGCT
66 CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
*
352 CAGGGAAATCGCATCGTTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTTTTTGGTCTTTGA
131 C-GGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTGA
*
417 ATTAAAAACTTATTTACGTCAGAA
193 ATTAAAAACTTATTTAAGTCAGAA
* * * * * * * *
441 TTGTATCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAAATTTTTCAAGTTATTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
506 CTTTGGTTCCTTAAAGTATTCAAGACGATTCATTCCTTCGAGTAATTTTTTGAACATTCCATGCT
66 CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * * * * *
571 TGGGAAATCGCATCTTTTGGTCCAAATAGTTTGTCA-TCTATAAACATCTTTTGGTTTTTAAATT
131 CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
635 AAAAACTTATTTACGTGAGAC
196 AAAAACTTATTTAAGTCAGAA
*
656 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAGCTTGTCGAAA-TGTTT-CGAGTTCTTTTAT
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTC-AAACT-TTTACGAGTTCTTTTAT
* * * * * *
719 GACTTTGATTCCTTAAAGTATTCAAAACGATCCATTCATTTGAGCTATTTTTCGAGCATTCCATG
64 AACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATG
** * * * * * *
784 CTTAGCAAATCACAACAATTGGTCCAAAATAGTTTGTCA-TTCGTAAACAACTTTTTGGTTTTTG
129 CTCGGGAAATCGCATCATTTGGTCC-AAATAGTTTGTCATTTTGTAAACAAC-TTTTGGTCTTTG
* *
848 AATTAAATACTTATTTACGTCAGAA
192 AATTAAAAACTTATTTAAGTCAGAA
* * * * * *
873 TTGTTTCTGTTTTGGTTCTTGGACGAACTTCCAAACTTGTTAAACTTTTAC-AGGTTATTTTATA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGA-GTTCTTTTATA
* * *
937 ACTTTGGTTCCTTAAAGTATTCATGACGATCCATTCCTTCGAGCCATTTTTCGAACATTCCATGC
65 ACTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
1002 TCGGGAAATCGCATCATTTGGTCCAAAT-GCTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
130 TCGGGAAATCGCATCATTTGGTCCAAATAG-TTTGTCATTTTGTAAACAACTTTTGGTCTTTGAA
* *
1066 TTTAAAACTTATTTACGTCAG-A
194 TTAAAAACTTATTTAAGTCAGAA
* * *
1088 TCGTTTCTCTTTTGGTTCTTGGATGAACTTATGAACTTGTGAAACTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
1153 CTTTGGTTCCTTAAAATATTCAGGACTATCCATTCCTTCGAGTAATTTTTCGAACATTCCATGCT
66 CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * *
1218 TGGGAAATCGCATTATTTGGTCCAAATAGTTTGTCA-TTTGTAAACAACTTTTGGT-TTTTAAAT
131 CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
1281 AAAAACCTTATTTAAGTGAGAC
196 AAAAA-CTTATTTAAGTCAGAA
* * * *
1303 TTGTTTCTCTTTTGGTTCTTGGAAGAACTTACGAGCTTGTCAAAATGTTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * * * *
1368 CTTCGATTCCTTAAAGTATTCAAAACAATCCATTCTTTTGAGCAATTTTTCGAGCTTTCCATGCT
66 CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * *
1433 CAGGAAATCGCACCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTTTTTAAATT
131 CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* *
1498 AAAAACTTATTTAAGTGAGAC
196 AAAAACTTATTTAAGTCAGAA
* * *
1519 TTGTTTCTCTTTTGGTTCTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * *
1584 CTTTGGTTCCTTAAAGTATTCATGATGATCCATTCCTTCAAGCCAATTTTT-GAACATTCCATGC
66 CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAG-CAATTTTTCGAACATTCCATGC
* *
1648 TTGGGAAATCGCATCATTTGGTCCAAATGGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
130 TCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
* * *
1713 TTAAAACTTATTTACGTTAGAA
195 TAAAAACTTATTTAAGTCAGAA
* * *
1735 TTGTTTCTCTTTTGGTTCTTGGATGAACTTATGAACTTGTGAAGCTTTTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * *
1800 CTTTGGTTCCTTAAAGTATTCAAGACGATGCATTCCTTCGAGCTA-TTTTCTGAACATTCCATGC
66 CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTC-GAACATTCCATGC
* * ** * * *
1864 TTGGGTAATCTAATCATTTTGTCCAAATAGTTTGTCAATTTGTGAACAACTTTTGGTCTTTGAAT
130 TCGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAAT
*
1929 TAAAAACTTATTTTCA-TCAGAA
195 TAAAAACTTA-TTTAAGTCAGAA
* * *
1951 TTGTTTCTCTATTGGTTCTTGGATGAACTTTCGAACTTGTCAAACTTTTACAAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * * * *
2016 -TTCGATTCCTTAAAGTA-T------GATCTATTCCTTCGAGCAATTTTTTGAACATTCAATACT
66 CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
* * * *
2073 CGAGAAATCGCATCATTTGGTCCAAATGGTTTGTCA-TTTGTAAACAACTTTTGATCTTTAAATT
131 CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
* * *
2137 AAAAACTTAGTTAAATGAGAA
196 AAAAACTTATTTAAGTCAGAA
* * * * *
2158 TTGTTTCGCTCTTGGTTCTTGAATGAACTTCCGAACTTGTCAAACTATTACGAGTTCTTTTATAA
1 TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
* * *
2223 CTTTGACTT-CTTAGAGTATTCAAGACGATCCATTCCTTTGAGAAATTTTTCGAACATTCCATGC
66 CTTTGA-TTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGC
* **
2287 TCAGGAAATCATATCATTTG
130 TCGGGAAATCGCATCATTTG
2307 TGATGCGAGC
Statistics
Matches: 1808, Mismatches: 241, Indels: 72
0.85 0.11 0.03
Matches are distributed among these distances:
206 3 0.00
207 98 0.05
208 69 0.04
209 7 0.00
213 10 0.01
214 36 0.02
215 631 0.35
216 574 0.32
217 215 0.12
218 51 0.03
219 114 0.06
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (216 bp):
TTGTTTCTCTTTTGGTTCTTGGATGAACTTACGAACTTGTCAAACTTTTACGAGTTCTTTTATAA
CTTTGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCAATTTTTCGAACATTCCATGCT
CGGGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT
AAAAACTTATTTAAGTCAGAA
Found at i:2434 original size:30 final size:30
Alignment explanation
Indices: 2398--2462 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
2388 AAGCAATCAA
* *
2398 GTTGCGAACATTGGAGCTGCGAACACTCAT
1 GTTGCGAACACTGGAGCTACGAACACTCAT
*
2428 GTTGCGAACACTGGAGCTACGAACAGTCAT
1 GTTGCGAACACTGGAGCTACGAACACTCAT
2458 GTTGC
1 GTTGC
2463 AGACACAGAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (30 bp):
GTTGCGAACACTGGAGCTACGAACACTCAT
Found at i:4207 original size:214 final size:215
Alignment explanation
Indices: 3760--4451 Score: 858
Period size: 214 Copynumber: 3.2 Consensus size: 215
3750 AAGGACAAGC
*
3760 TCGCATCAATTTGTTCCAAAATAGTTTGTCATTTTGTAAACAAC-ATTTGGTCTTTGAATTAAAA
1 TCGCATC-ATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTA-TTGGTCTTTGAATTAAAA
* *
3824 ACTTATTTACGTCAAAAATGTTTCTCTTTTGGTTCTTAGACGAACTTCCGAACTTGTCAAACTTT
64 ACTTATTTACGTCAAAATTGTTTCTC-TTTGGTTCTTAGACGAAC-TCTGAACTTGTCAAACTTT
* *
3889 TACGAGTTCTTTTATAACTTTGGTTCCTTTAAGTATTCATGATGAT-CTATTCCTTCGAGCAATT
127 TACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCT-TTCCTTCGAGCAATT
* *
3953 TTTCGAACATTCCATGACCGGGAAA
191 TTCCGAACATTCCATGATCGGGAAA
* * *
3978 -CAGCATCACTTGGTCC-AAATAGTTTGTCA-TTTGTAAACAACTATTGGT-TTTTAAATAAAAA
1 TC-GCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTATTGGTCTTTGAATTAAAAA
* * * * * *
4039 CTTATTTAAGTGAGAATTCTTTCTCTCATGGTTCTTAAAC-AAGCATCTGAACTTGTCAAACTTT
65 CTTATTTACGTCAAAATTGTTTCTCT-TTGGTTCTTAGACGAA-C-TCTGAACTTGTCAAACTTT
* * *
4103 TACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTAAAGACGATCCTTTCCTTCGAGCAATTT
127 TACGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCTTTCCTTCGAGCAATTT
* *
4168 CCCGAACATTCCATGATTGGGAAA
192 TCCGAACATTCCATGATCGGGAAA
* *
4192 TCGCATC-TATTGGTCC-AAATAGTTTGTCATTTCGTAAACAACTTTTGGTCTTTGAATTAAAAA
1 TCGCATCAT-TTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTATTGGTCTTTGAATTAAAAA
* *
4255 CTTATTTACGTCAAAATTGTTTCTCTTTGG----T-GACGAACTTTCGAATTTGTCAAACTTTTA
65 CTTATTTACGTCAAAATTGTTTCTCTTTGGTTCTTAGACGAACTCT-GAACTTGTCAAACTTTTA
* *
4315 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCATTCC-TCTGAG-ACGTTT
129 CGAGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCTTTCCTTC-GAGCA-ATTT
* *
4378 TCTGAACATTCAATGATCGGGAAA
192 TCCGAACATTCCATGATCGGGAAA
* * * *
4402 TCGCATCATTTGTTCCAAAACAGTTTGTCATTTTTTAAACAACTTTTGGT
1 TCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTATTGGT
4452 GATACGAAAC
Statistics
Matches: 411, Mismatches: 48, Indels: 37
0.83 0.10 0.07
Matches are distributed among these distances:
209 5 0.01
210 106 0.26
211 34 0.08
213 3 0.01
214 163 0.40
215 40 0.10
216 47 0.11
217 8 0.02
218 5 0.01
ACGTcount: A:0.28, C:0.18, G:0.14, T:0.39
Consensus pattern (215 bp):
TCGCATCATTTGGTCCAAAATAGTTTGTCATTTTGTAAACAACTATTGGTCTTTGAATTAAAAAC
TTATTTACGTCAAAATTGTTTCTCTTTGGTTCTTAGACGAACTCTGAACTTGTCAAACTTTTACG
AGTTCTTTTATAACTTTGGTTCCTTAAAGTATTCAAGATGATCCTTTCCTTCGAGCAATTTTCCG
AACATTCCATGATCGGGAAA
Found at i:6319 original size:217 final size:216
Alignment explanation
Indices: 5942--6655 Score: 932
Period size: 215 Copynumber: 3.3 Consensus size: 216
5932 ACTCATATCG
* * * * *
5942 TTTGGTCTTTGAATTTAAACCTTATTTATGTAAGAATTGTTTCTCTTTTTGTTCTTGGACGAACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACGAACT
* * * * **
6007 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAATTCGGATCCTTAACGTATTGAAGACAAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * * *
6072 CCATTCCTTCGAGCAATTTTCCGAACATTCCATGCTCCAAAAATCACACCATTTGGTCCAAAATA
131 CCATTCCTTCGAGCAATTTTTCGGACATTCCATGCTCGAGAAATCACATCATTTGGTCC-AAATA
6137 GTTTGTCATTTTGTAAACAACT
195 GTTTGTCATTTTGTAAACAACT
* *
6159 TTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTCTCTCTTTTGGTTCTTGGACGTACT
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACGAACT
** * ** ** *
6224 TTTGAACTTGTCAAACTTGTAAAAGTTCTTTTATAACTTCTTTTCTTTAAAGTATTCAAGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
** *
6289 CCATTCCTTCGAGTTATTTTTCGGACATTCCATGCTCGAGAAATC-GATCATTTGGTCCAAATAG
131 CCATTCCTTCGAGCAATTTTTCGGACATTCCATGCTCGAGAAATCACATCATTTGGTCCAAATAG
*
6353 TTTTTCATTTTGTAAACAACT
196 TTTGTCATTTTGTAAACAACT
** * *
6374 TTTCATCTTTGAATTAAAAACTTATTTACGTCAAAATTGTTTCTCTTTTGGTTCTTGGACGAACA
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACGAACT
* * * *
6439 TCCAAACTTGTCAAACTTTTACGAGTTATTTTATATCTTCGGTTCCTTAAAGTATTCATGATGAT
66 TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
* * * *
6504 CCATTCCTTCGAGGAATTTTTC-GAGCATTCCATGCTCGGGAAATCACATAATCTGGTCCAAATA
131 CCATTCCTTCGAGCAATTTTTCGGA-CATTCCATGCTCGAGAAATCACATCATTTGGTCCAAATA
6568 GTTTGTCA-TTTGTAAACAACT
195 GTTTGTCATTTTGTAAACAACT
* * ** * * *
6589 TTTAGTCTTTAAATTAAAAACTTATTTAATTGAGAAGTGTTTCTCTCTTT-GTTCTTGGATGAAC
1 TTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCT-TTTGGTTCTTGGACGAAC
6653 TTC
65 TTC
6656 TGATACGGCC
Statistics
Matches: 429, Mismatches: 65, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
214 2 0.00
215 243 0.57
216 36 0.08
217 148 0.34
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (216 bp):
TTTGGTCTTTGAATTAAAAACTTATTTACGTCAGAATTGTTTCTCTTTTGGTTCTTGGACGAACT
TCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGAT
CCATTCCTTCGAGCAATTTTTCGGACATTCCATGCTCGAGAAATCACATCATTTGGTCCAAATAG
TTTGTCATTTTGTAAACAACT
Found at i:7063 original size:39 final size:39
Alignment explanation
Indices: 7017--7115 Score: 180
Period size: 39 Copynumber: 2.5 Consensus size: 39
7007 TTAAATAGGG
7017 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
7056 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
1 TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
* *
7095 TTTTAAGGTGTCTAAGTTTGA
1 TTTTAATGTGTCTTAGTTTGA
7116 GACAAATTAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 58 1.00
ACGTcount: A:0.25, C:0.05, G:0.17, T:0.53
Consensus pattern (39 bp):
TTTTAATGTGTCTTAGTTTGATACATATTTAATAGTTGT
Found at i:7221 original size:32 final size:32
Alignment explanation
Indices: 7161--7223 Score: 90
Period size: 32 Copynumber: 2.0 Consensus size: 32
7151 AGCCGAAATT
* *
7161 AATTAGCTGATTAATGTGTCTCAGGTACATGC
1 AATTAGCTGATTAATATATCTCAGGTACATGC
* *
7193 AATTAGCTGATTAATATATTTCATGTACATG
1 AATTAGCTGATTAATATATCTCAGGTACATG
7224 TACGGATGGC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.32, C:0.13, G:0.17, T:0.38
Consensus pattern (32 bp):
AATTAGCTGATTAATATATCTCAGGTACATGC
Found at i:7531 original size:10 final size:10
Alignment explanation
Indices: 7516--7548 Score: 66
Period size: 10 Copynumber: 3.3 Consensus size: 10
7506 TCTAGCCTAG
7516 TCCATTCAGC
1 TCCATTCAGC
7526 TCCATTCAGC
1 TCCATTCAGC
7536 TCCATTCAGC
1 TCCATTCAGC
7546 TCC
1 TCC
7549 TAACTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.18, C:0.42, G:0.09, T:0.30
Consensus pattern (10 bp):
TCCATTCAGC
Found at i:8736 original size:215 final size:214
Alignment explanation
Indices: 8199--11414 Score: 3352
Period size: 215 Copynumber: 15.2 Consensus size: 214
8189 AGATCGTATT
* * * * **
8199 AACTTCTGAACTTGTCAAACTTTTAAGAGTTCTGTTATAGCTTCAATTATTTAAAGTATTCAAGA
1 AACTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGA
* * * * * *
8264 CAATCCATTCCTTCGAGCTA-TTTTCCAAACATTCCATGATCGAGAAATCACATCATTTGGTTCA
65 CGATCCATTCCTTCGAGCTATTTTTCGAGA-ATTCCATGCTCGAGAAATCGCATCATTTGGTCCA
**
8328 AATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTG
129 AATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTG
*
8393 TATCTCTCTTGTTTCTT-G--G
193 TATCTCTCTTGGTTCTTGGATG
* * * *
8412 -A---CGAACTTGTAAAACTTTTATGAGTTCTTTTATAACTTCAATTCCTTAAAGTATTCAAGAT
1 AACTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGAC
* * ** * *
8473 GAT-CGTTACCTTCGAGAC-GTTTCCCGA-ACATTCCATACTC-AGGAAATCACATCATTTGGTC
66 GATCCATT-CCTTCGAG-CTATTTTTCGAGA-ATTCCATGCTCGA-GAAATCGCATCATTTGGTC
* *
8534 CAAATAGTTTGTCATTTTGT-AACAACTTTTGGTCTTTGAGTTAAAAACTTATTTACGTGAGAAT
127 CAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* *
8598 TGCATCTCTCCTGGTTCTTGGATG
191 TGTATCTCTCTTGGTTCTTGGATG
* * *
8622 AACTTCTGATCTTGTCAAACTTTTATGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGA
1 AACTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGA
* *
8687 CGATCCATTCCTTCAAGCTATTTTTCGAGAATTCCATGCTCGAGAAATCACATCATTTGGTCCAA
65 CGATCCATTCCTTCGAGCTATTTTTCGAGAATTCCATGCTCGAGAAATCGCATCATTTGGTCCAA
* * * *
8752 ATAGTTTGTCACTTGTAAACAACATTTGGTCTTTGAATTGAAAATTTATTTACATGAGAATTGTA
130 ATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTA
* * *
8817 ACTCTCTTGGTTTTTGGATA
195 TCTCTCTTGGTTCTTGGATG
*
8837 AACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAG
1 AACTT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAAAGTATTCAAG
* * * * * * * *
8901 ACGATCCATTCCTTCGAGCTA-TTATGGAGCATTCCATGCTTGAGAAATTGTACCATTTGATCCA
64 ACGATCCATTCCTTCGAGCTATTTTTCGAGAATTCCATGCTCGAGAAATCGCATCATTTGGTCCA
* * ** *
8965 AATAGTTTGTCATTTGTAACCAACTTTTAGTCTTTGAATT-TTAACTTATTTACAAGAGAATTGT
129 AATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGT
*
9029 ATCTCTCTTGGTGT-TTGGACG
194 ATCTCTCTTGGT-TCTTGGATG
* * *
9050 AACTTCCAAACTTGTCAAACTTTTACGAGTTATTTTATAACTTC-GATTCCTTAAAGTATTCATG
1 AACTT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAAAGTATTCAAG
* * ** * * * * *
9114 ATGATCCATTCCTTCAAGGAATGTTTCGAGCATTCCATGCTCGGGAAATCGTAT-TTTCTGGTCC
64 ACGATCCATTCCTTCGAGCTATTTTTCGAGAATTCCATGCTCGAGAAATCGCATCATT-TGGTCC
* * *
9178 AAATAGTTTGTCATTTGTAAACATCTTTTGGTCTTTAAATTAAAAACTTATTTA-ATTA-AGATT
128 AAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGA-ATT
* *
9241 GTTTCTCTCTTGGTTCTTGGACG
192 GTATCTCTCTTGGTTCTTGGATG
* * * * *
9264 AACTTCAAAACTTGTCAAACTTTTACGAATTCTTTTATAACTTCGGTTCCTTAATGTATGCAAGA
1 AACTTC-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGA
* * * * * * *
9329 TGATTCTTTCCTTCGAGCAATTTCAT-GA-ACATTCCATGCTCAAGAAATCGCATTATTTGGTCC
65 CGATCCATTCCTTCGAGCTATTT-TTCGAGA-ATTCCATGCTCGAGAAATCGCATCATTTGGTCC
* ** **
9392 AAATAGTTTGTCA--TGAAAACAAAATTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTG
128 AAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTG
*
9455 TATCTCTCTGGGTTCTT-G--G
193 TATCTCTCTTGGTTCTTGGATG
* *
9474 -A--T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTGAAAGTATTCAAGT
1 AACTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTT-AAAGTATTCAAGA
* * * *
9534 CGACCCTTTCCTTCAAGAC-ATTTCTT-GA-ACATTCCATGCTCAAGAAATCGCATCATTTGGTC
65 CGATCCATTCCTTCGAG-CTATTT-TTCGAGA-ATTCCATGCTCGAGAAATCGCATCATTTGGTC
* * * *
9596 CAAATAGTTTGTCATTTTGTAAACAAATTTTGGTCTTGGAGTTAAAAACTTATTTACAAGAGAAT
127 CAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* * *
9661 TGTATCTCTCCTGCTTCTTGGACG
191 TGTATCTCTCTTGGTTCTTGGATG
*
9685 AACTTTCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTC-GATTCCTTAAAGTATTCAAG
1 AAC-TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAAAGTATTCAAG
* * * * *
9749 ATGATCAATTCCTTAGAGCTATTTTTCGAGCATTCCATGCTCGAGAAATTGCATCATTTGGTCCA
64 ACGATCCATTCCTTCGAGCTATTTTTCGAGAATTCCATGCTCGAGAAATCGCATCATTTGGTCCA
*
9814 AATAGTTTGTCATTTGTAACCAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGT
129 AATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGT
**
9879 ATCTCTCTCAGTTCTTGGATG
194 ATCTCTCTTGGTTCTTGGATG
* *
9900 AACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGA
1 AAC-TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGA
* ** * * * * * *
9965 CAATCCATTAATTCAAGCTATTTTTCGAGAAATCGATGCTCGAGAAATTGTATCATTTGGTTCAA
65 CGATCCATTCCTTCGAGCTATTTTTCGAGAATTCCATGCTCGAGAAATCGCATCATTTGGTCCAA
* * * *
10030 ATAGTTTGTCATTTGTAACCAACTTTTGGCCTTTCAATTAAAAACTTATTTACATGAGAATTGCA
130 ATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTA
* *
10095 TCTCTCTTGCTTTTTGGATG
195 TCTCTCTTGGTTCTTGGATG
* * *
10115 AACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAAATTTAGTTCCTTAAAGTATTCAAGA
1 AAC-TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGA
* * * *
10180 CGATCCATTCCTTTGAGCTATTTTTAGA-ACATTCCATGCTCGAGAAATCGTATCATTTTG-CCA
65 CGATCCATTCCTTCGAGCTATTTTTCGAGA-ATTCCATGCTCGAGAAATCGCATCATTTGGTCCA
* * * * *
10243 AATATTTTGTCATTTTGTAAACAACTTTTGGCCTTTGAATTAAACACTTATTTATATGAGAATTT
129 AATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTG
*
10308 TATCTCTCTTGGCTCTT-G--G
193 TATCTCTCTTGGTTCTTGGATG
*
10327 -A--T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTTAAGAC
1 AACTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGAC
* * * ** * * ** *
10388 AATCCTTTCCTTCGAGAC-ATTTCTCGATCATTCCATGCTTGGAAAAATCTTATCATTTGGTCTA
66 GATCCATTCCTTCGAG-CTATTTTTCGAGAATTCCATGC-TCGAGAAATCGCATCATTTGGTCCA
*
10452 AATAGTTTGTCATTTGTAACCAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGT
129 AATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGT
***
10517 ATCTCTCCCAGTTCTTGGATG
194 ATCTCTCTTGGTTCTTGGATG
* * *
10538 AACTTCCGAACCTATCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGA
1 AACTT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGA
* * * * *
10603 TGATCAATT-CTATCGAGCTA-TTTTCAGAGCATTACATGCTCAAGAAATCGCATCATTTGGTCC
65 CGATCCATTCCT-TCGAGCTATTTTTC-GAGAATTCCATGCTCGAGAAATCGCATCATTTGGTCC
* *
10666 AAATAGTTTGTCATTTGTAAACAGCTTTTGGTCTTTGAATTAAAAACTTGTTTACATGAGAATTG
128 AAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTG
*
10731 TATCTCTGTTGGTTCTT-G--G
193 TATCTCTCTTGGTTCTTGGATG
** * * * **
10750 -A--T-GAACTTGTCAAACTTTTATAAGTTCTTTTATAACTTTAGTTCCTTAGAGTATTCATGTT
1 AACTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGAC
* ** * * * *
10811 TATCCATTCCTTCGAGGAATTTTTTGAGCATTCCATGCTC-AGGAAATTGCACCATTTGGTCCAA
66 GATCCATTCCTTCGAGCTATTTTTCGAGAATTCCATGCTCGA-GAAATCGCATCATTTGGTCCAA
* * * * **
10875 ATAGTTGGTCATTTGCAAACAAATTTTGGTCTTTAAATTAAAATTTTATTTA-ATTGAGAATTGT
130 ATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACA-TGAGAATTGT
* * *
10939 TTCTCTCGTGGTTCTTGGACG
194 ATCTCTCTTGGTTCTTGGATG
* * * * **
10960 AACTTCCGAACTTGTCAAATTTTTATGATTTCTTTTATAACTTCGGTTAGTTAAAGTATTCAAGA
1 AACTT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGA
* * * * * * *
11025 TGATCCTTTCCATCAAG-TA-ATTTC-ATGAACATTCCATGCTCGGGAAATCGCATTATTTGGTC
65 CGATCCATTCCTTCGAGCTATTTTTCGA-G-A-ATTCCATGCTCGAGAAATCGCATCATTTGGTC
* * **
11087 CAAATGGTTT-T-AGCTTGTAAACAAAATTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
127 CAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
11150 TGTA--TCTC----TT-TT-G--G
191 TGTATCTCTCTTGGTTCTTGGATG
* * * *
11164 ---TTC-ATCTTGTCAAACTTCTACGAGTTCTTTTATAACTTCGGTT-CTTGAAATTATTCAAGT
1 AACTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTT-AAAGTATTCAAG-
*** * * * *
11224 A-GATTTTTTCCTTCGAGAC-ATTTCTCGA-ACATTTCATGCTCGGGAAATCGCATCATTTGGTT
64 ACGATCCATTCCTTCGAG-CTATTTTTCGAGA-ATTCCATGCTCGAGAAATCGCATCATTTGGTC
* * *
11286 CAAATAGTTTGTCATTTTATAAACAACTTTTGATCTTTGAATT-AAAACTTATTTACGTGAGAAT
127 CAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* *
11350 TGTATTTCTCATGGTTCTT-G--G
191 TGTATCTCTCTTGGTTCTTGGATG
*
11371 -A---CGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTC
1 AACTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTC
11415 TGATACGAGT
Statistics
Matches: 2556, Mismatches: 343, Indels: 213
0.82 0.11 0.07
Matches are distributed among these distances:
198 2 0.00
199 98 0.04
200 28 0.01
201 29 0.01
202 5 0.00
204 4 0.00
205 117 0.05
206 7 0.00
207 352 0.14
208 257 0.10
209 23 0.01
210 3 0.00
211 6 0.00
212 45 0.02
213 145 0.06
214 350 0.14
215 888 0.35
216 194 0.08
217 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (214 bp):
AACTTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGAC
GATCCATTCCTTCGAGCTATTTTTCGAGAATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAA
TAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTAT
CTCTCTTGGTTCTTGGATG
Found at i:10475 original size:638 final size:632
Alignment explanation
Indices: 8205--11414 Score: 3430
Period size: 638 Copynumber: 5.1 Consensus size: 632
8195 TATTAACTTC
* * * * * ** *
8205 TGAACTTGTCAAACTTTTAAGAGTTCTGTTATAGCTTCAATTATTTAAAGTATTCAAGACAATCC
1 TGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGACGATCC
* * * *
8270 ATTCCTTCGAGCTATTTTCCA-AACATTCCATGATCGAGAAATCACATCATTTGGTTCAAATAGT
66 ATTCCTTCGAGCTATTTT-TAGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGT
**
8334 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTATCTC
130 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTTATTTACATGAGAATTGTATCTC
** * * *
8399 TCTTGTTTCTT-G-G-A--CGAACTTGTAAAACTTTTATGAGTTCTTTTATAACTTCAATTCCTT
194 TCTTGGCTCTTGGAGAATTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTCCTT
* * * * * * *
8459 AAAGTATTCAAGATGATCGTTACCTTCGAGACGTTTCCCGAACATTCCATACTCAGGAAATCACA
258 AAAGTATTCAAGATGATCCTTTCCTTCGAGACATTTCTCGAACATTCCATGCTCGGGAAATCGCA
*
8524 TCATTTGGTCCAAATAGTTTGTCATTTTGT-AACAACTTTTGGTCTTTGAGTTAAAAACTTATTT
323 TCATTTGGTCCAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTT
* * * ** * *
8588 ACGTGAGAATTGCATCTCTC-CTGGTTCTTGGATGAACTTCTGATCTTGTCAAACTTTTATGAGT
387 ACATGAGAATTGTATCTCTCTC-AGTTCTTGGATGAACTTCAAAACTTGTCAAACTTTTACGAGT
*
8652 TCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCTATTTTTCGAGA
451 TCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCTA-TTTTCGAGA
* * * *
8717 ATTCCATGCTCGAGAAATCACATCATTTGGTCCAAATAGTTTGTCACTTGTAAACAACATTTGGT
515 AATCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACATTTGGT
* * * *
8782 CTTTGAATTGAAAATTTATTTACATGAGAATTGTAACTCTCTTGGTTTTTGGATAAA
580 CTTTGAATTAAAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGG----A
*
8839 CTTCCGAACTTGTCAAACTTTTACT-AGTTCTTTTATAAC-TTCGATTCCTTAAAGTATTCAAGA
1 --T--GAACTTGTCAAACTTTTA-TGAGTTCTTTTATAACTTTAG-TTCCTTAAAGTATTCAAGA
* * * * * * * *
8902 CGATCCATTCCTTCGAGCTA-TTATGGAGCATTCCATGCTTGAGAAATTGTACCATTTGATCCAA
60 CGATCCATTCCTTCGAGCTATTTTTAGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAA
* * ** *
8966 ATAGTTTGTCA-TTTGTAACCAACTTTTAGTCTTTGAATTTTAACTTATTTACAAGAGAATTGTA
125 ATAGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACTTATTTACATGAGAATTGTA
* * *
9030 TCTCTCTTGG-TGTTTGGACGAACTTCCAAACTTGTCAAACTTTTACGAGTTATTTTATAACTTC
190 TCTCTCTTGGCT-CTTGGA-GAA-TT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC
* * * *
9094 GATTCCTTAAAGTATTCATGATGATCCATTCCTTCAAGGA-ATGTT-TCGAGCATTCCATGCTCG
251 G-TTCCTTAAAGTATTCAAGATGATCCTTTCCTTCGA-GACAT-TTCTCGAACATTCCATGCTCG
* * * *
9157 GGAAATCGTAT-TTTCTGGTCCAAATAGTTTGTCATTTGTAAACATCTTTTGGTCTTTAAATTAA
313 GGAAATCGCATCATT-TGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAA
* * ** *
9221 AAACTTATTTA-ATTA-AGATTGTTTCTCTCTTGGTTCTTGGACGAACTTCAAAACTTGTCAAAC
377 AAACTTATTTACATGAGA-ATTGTATCTCTCTCAGTTCTTGGATGAACTTCAAAACTTGTCAAAC
* * * * * * * *
9284 TTTTACGAATTCTTTTATAACTTCGGTTCCTTAATGTATGCAAGATGATTCTTTCCTTCGAGC-A
441 TTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCTA
* * *
9348 ATTTC-ATGAACATTCCATGCTCAAGAAATCGCATTATTTGGTCCAAATAGTTTGTCA--TGAAA
506 TTTTCGA-GAA-A-TCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAA
* ** *
9410 ACAAAATTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTATCTCTCTGGGTTCTTGGA
568 ACAACATTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
* ** * *
9475 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTGAAAGTATTCAAGTCGACC
1 TGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTAGTTCCTT-AAAGTATTCAAGACGATC
* * *
9539 CTTTCCTTCAAGAC-ATTTCTT-GAACATTCCATGCTCAAGAAATCGCATCATTTGGTCCAAATA
65 CATTCCTTCGAG-CTATTT-TTAGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATA
* * * *
9602 GTTTGTCATTTTGTAAACAAATTTTGGTCTTGGAGTTAAAAACTTATTTACAAGAGAATTGTATC
128 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATT-AAAACTTATTTACATGAGAATTGTATC
* *
9667 TCTCCT-GCTTCTTGGACGAACTTTCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTCGA
192 TCTCTTGGC-TCTTGGA-GAA--TTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCG-
** * * * *
9731 TTCCTTAAAGTATTCAAGATGATCAATTCCTTAGAG-CTATTTTTCGAGCATTCCATGCTCGAGA
252 TTCCTTAAAGTATTCAAGATGATCCTTTCCTTCGAGAC-ATTTCTCGAACATTCCATGCTCGGGA
* *
9795 AATTGCATCATTTGGTCCAAATAGTTTGTCATTTGTAACCAACTTTTGGTCTTTGAATTAAAAAC
316 AATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
9860 TTATTTACATGAGAATTGTATCTCTCTCAGTTCTTGGATGAACTTTC-AAACTTGTCAAACTTTT
381 TTATTTACATGAGAATTGTATCTCTCTCAGTTCTTGGATGAAC-TTCAAAACTTGTCAAACTTTT
* * **
9924 ACGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGACAATCCATTAATTCAAGCTATTTT
445 ACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCTA-TTT
* * * * * * *
9989 TCGAGAAATCGATGCTCGAGAAATTGTATCATTTGGTTCAAATAGTTTGTCATTTGTAACCAACT
509 TCGAGAAATCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACA
* * * * *
10054 TTTGGCCTTTCAATTAAAAACTTATTTACATGAGAATTGCATCTCTCTTGCTTTTTGGATGAA
574 TTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTT-G--G-A
*
10117 CTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAAATTTAGTTCCTTAAAGTATTCAAGACG
1 ---T-GAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGACG
* * *
10182 ATCCATTCCTTTGAGCTATTTTTAGAACATTCCATGCTCGAGAAATCGTATCATTTTG-CCAAAT
62 ATCCATTCCTTCGAGCTATTTTTAGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAAT
* * * *
10246 ATTTTGTCATTTTGTAAACAACTTTTGGCCTTTGAATTAAACACTTATTTATATGAGAATTTTAT
127 AGTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAA-ACTTATTTACATGAGAATTGTAT
10311 CTCTCTTGGCTCTT-G-G-A-T-GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTC
191 CTCTCTTGGCTCTTGGAGAATTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTTC
* ** * * *
10371 CTTAAAGTATTTAAGACAATCCTTTCCTTCGAGACATTTCTCGATCATTCCATGCTTGGAAAAAT
255 CTTAAAGTATTCAAGATGATCCTTTCCTTCGAGACATTTCTCGAACATTCCATGCTCGG-GAAAT
** * *
10436 CTTATCATTTGGTCTAAATAGTTTGTCATTTGTAACCAACTTTTGGTCTTTGAATTAAAAACTTA
319 CGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTA
* ** * *
10501 TTTACATGAGAATTGTATCTCTCCCAGTTCTTGGATGAACTTCCGAACCTATCAAACTTTTACGA
384 TTTACATGAGAATTGTATCTCTCTCAGTTCTTGGATGAACTTCAAAACTTGTCAAACTTTTACGA
* * * *
10566 GTTCTTTTATAACTTCGGTTCCTTAAAGTATTCAAGATGATCAATT-CTATCGAGCTATTTTCAG
449 GTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCT-TCAAGCTATTTTC-G
* * * * *
10630 AGCATTACATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAGCTTTT
512 AGAAATCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACATTT
* *
10695 GGTCTTTGAATTAAAAACTTGTTTACATGAGAATTGTATCTCTGTTGGTTCTTGGA
577 GGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
* * * ***
10751 TGAACTTGTCAAACTTTTATAAGTTCTTTTATAACTTTAGTTCCTTAGAGTATTCATGTTTATCC
1 TGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGACGATCC
** * * * *
10816 ATTCCTTCGAGGAATTTTTTGAGCATTCCATGCTC-AGGAAATTGCACCATTTGGTCCAAATAGT
66 ATTCCTTCGAGCTATTTTTAGAACATTCCATGCTCGA-GAAATCGCATCATTTGGTCCAAATAGT
* * * * * *
10880 TGGTCA-TTTGCAAACAAATTTTGGTCTTTAAATTAAAATTTTATTTA-ATTGAGAATTGTTTCT
130 TTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAA-CTTATTTACA-TGAGAATTGTATCT
* * * * *
10943 CTCGTGGTTCTTGGACGAACTTCCGAACTTGTCAAATTTTTATGATTTCTTTTATAACTTCGGTT
193 CTCTTGGCTCTTGGA-GAA-TT-CGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTC-GTT
** * *
11008 AGTTAAAGTATTCAAGATGATCCTTTCCATCAAGTA-ATTTCAT-GAACATTCCATGCTCGGGAA
254 CCTTAAAGTATTCAAGATGATCCTTTCCTTCGAG-ACATTTC-TCGAACATTCCATGCTCGGGAA
* * * **
11071 ATCGCATTATTTGGTCCAAATGGTTT-T-AGCTTGTAAACAAAATTTGGTCTTTGAATTAAAAAC
317 ATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAAC
* *
11134 TTATTTACATGAGAATTGTA----TCTC--TT-TT-G--G---TTC--ATCTTGTCAAACTTCTA
381 TTATTTACATGAGAATTGTATCTCTCTCAGTTCTTGGATGAACTTCAAAACTTGTCAAACTTTTA
* * *** *
11184 CGAGTTCTTTTATAACTTCGGTT-CTTGAAATTATTCAAGTA-GATTTTTTCCTTCGAGAC-ATT
446 CGAGTTCTTTTATAACTTCAGTTCCTT-AAAGTATTCAAG-ACGATCCATTCCTTCAAG-CTATT
* * ** * *
11246 TCTCGA-ACATTTCATGCTCGGGAAATCGCATCATTTGGTTCAAATAGTTTGTCATTTTATAAAC
508 T-TCGAGA-AATCCATGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAAAC
* * * * *
11310 AACTTTTGATCTTTGAATT-AAAACTTATTTACGTGAGAATTGTATTTCTCATGGTTCTTGGA
570 AACATTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
* * * *
11372 CGAACATGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTC
1 TGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTAGTTC
11415 TGATACGAGT
Statistics
Matches: 2185, Mismatches: 301, Indels: 191
0.82 0.11 0.07
Matches are distributed among these distances:
620 3 0.00
621 181 0.08
622 31 0.01
623 3 0.00
626 1 0.00
628 1 0.00
629 5 0.00
630 158 0.07
631 18 0.01
632 64 0.03
633 49 0.02
634 32 0.01
635 225 0.10
636 216 0.10
637 168 0.08
638 488 0.22
639 6 0.00
640 67 0.03
641 4 0.00
642 143 0.07
643 139 0.06
644 8 0.00
645 73 0.03
646 99 0.05
647 3 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (632 bp):
TGAACTTGTCAAACTTTTATGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAAGACGATCC
ATTCCTTCGAGCTATTTTTAGAACATTCCATGCTCGAGAAATCGCATCATTTGGTCCAAATAGTT
TGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAACTTATTTACATGAGAATTGTATCTCTC
TTGGCTCTTGGAGAATTCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGTTCCTTAAA
GTATTCAAGATGATCCTTTCCTTCGAGACATTTCTCGAACATTCCATGCTCGGGAAATCGCATCA
TTTGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACAT
GAGAATTGTATCTCTCTCAGTTCTTGGATGAACTTCAAAACTTGTCAAACTTTTACGAGTTCTTT
TATAACTTCAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTCAAGCTATTTTCGAGAAATCCA
TGCTCAAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACATTTGGTCTTTGA
ATTAAAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
Found at i:10601 original size:423 final size:423
Alignment explanation
Indices: 8205--11414 Score: 3466
Period size: 423 Copynumber: 7.6 Consensus size: 423
8195 TATTAACTTC
* * * * ** *
8205 TGAACTTGTCAAACTTTTAAGAGTTCTGTTATAGCTTCAATTATTTAAAGTATTCAAGACAATCC
1 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCC
* * * * * * *
8270 ATTCCTTCGAG-CTATTT-TCCAAACATTCCATG-ATCGAGAAATCACATCATTTGGTTCAAATA
66 ATTCCTTCAAGAC-ATTTCT-CGAGCATTCCATGCTTGGAGAAATCGCATCATTTGGTCCAAATA
**
8332 GTTTGTCATTTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTATGTGAGAATTGTATC
129 GTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATC
* * * * **
8397 TCTCTTGTTTCTT-G--G-A----CGAACTTGTAAAACTTTTATGAGTTCTTTTATAACTTCAAT
193 TCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
* * * * *
8454 TCCTTAAAGTATTCAAGATGAT-CGTTACCTTCGAGAC-GTTTCCCGAACATTCCATACTC-AGG
258 TCCTTAAAGTATTCAAGATGATCCATT-CCTTCGAG-CTATTTTCAGAACATTCCATGCTCGA-G
* *
8516 AAATCACATCATTTGGTCCAAATAGTTTGTCATTTTGT-AACAACTTTTGGTCTTTGAGTTAAAA
320 AAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAA
* * *
8580 ACTTATTTACGTGAGAATTGCATCTCTCCTGGTTCTTGGA
384 ACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
* *
8620 TGAACTTCTGATCTTGTCAAACTTTTATGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAA
1 TG-A------A-CTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAA
* * * *
8685 GACGATCCATTCCTTCAAG-CTATTTTTCGAGAATTCCATGC-TCGAGAAATCACATCATTTGGT
58 GACGATCCATTCCTTCAAGAC-ATTTCTCGAGCATTCCATGCTTGGAGAAATCGCATCATTTGGT
* * * *
8748 CCAAATAGTTTGTCACTTGTAAACAACATTTGGTCTTTGAATTGAAAATTTATTTACATGAGAAT
122 CCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* * * ** *
8813 TGTAACTCTCTTGGTTTTTGGATAAACTTCCGAACTTGTCAAACTTTTACTAGTTCTTTTATAAC
187 TGTATCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * * *
8878 TTCGATTCCTTAAAGTATTCAAGACGATCCATTCCTTCGAGCTATTAT-GGAGCATTCCATGCTT
252 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCAGAACATTCCATGCTC
* * * * * * *
8942 GAGAAATTGTACCATTTGATCCAAATAGTTTGTCATTTGTAACCAACTTTTAGTCTTTGAATT-T
317 GAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAA
* *
9006 TAACTTATTTACAAGAGAATTGTATCTCTCTTGGTGT-TTGGACGAA
382 AAACTTATTTACATGAGAATTGTATCTCTCTTGGT-TCTT-G--G-A
* * * *
9052 CTTCCAAACTTGTCAAACTTTTACGAGTTATTTTATAACTTC-GATTCCTTAAAGTATTCATGAT
1 --T--GAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAG-TTCCTTAAAGTATTCAAGAC
* * *
9116 GATCCATTCCTTCAAGGA-ATGTT-TCGAGCATTCCATGCTCGG-GAAATCGTAT-TTTCTGGTC
61 GATCCATTCCTTCAA-GACAT-TTCTCGAGCATTCCATGCTTGGAGAAATCGCATCATT-TGGTC
* * *
9177 CAAATAGTTTGTCATTTGTAAACATCTTTTGGTCTTTAAATTAAAAACTTATTTA-ATTA-AGAT
123 CAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGA-AT
* * ** *
9240 TGTTTCTCTCTTGGTTCTTGGACGAACTTCAAAACTTGTCAAACTTTTACGAATTCTTTTATAAC
187 TGTATCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
* * * * *
9305 TTCGGTTCCTTAATGTATGCAAGATGATTCTTTCCTTCGAGC-AATTTCATGAACATTCCATGCT
252 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCA-GAACATTCCATGCT
* * * **
9369 CAAGAAATCGCATTATTTGGTCCAAATAGTTTGTCA--TGAAAACAAAATTTGGTCTTTGAATTA
316 CGAGAAATCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTA
** *
9432 AAAACTTATTTATGTGAGAATTGTATCTCTCTGGGTTCTTGGA
381 AAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
* * *
9475 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT-CTTGAAAGTATTCAAGTCGACC
1 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTT-AAAGTATTCAAGACGATC
* * * **
9539 CTTTCCTTCAAGACATTTCTTGAACATTCCATGC-TCAAGAAATCGCATCATTTGGTCCAAATAG
65 CATTCCTTCAAGACATTTCTCGAGCATTCCATGCTTGGAGAAATCGCATCATTTGGTCCAAATAG
* * * *
9603 TTTGTCATTTTGTAAACAAATTTTGGTCTTGGAGTTAAAAACTTATTTACAAGAGAATTGTATCT
130 TTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATCT
* * * *
9668 CTCCTGCTTCTTGGACGAACTTTCGAACTTGTTAAACTTTTACGAGTTCTTTTATAACTTCGATT
194 CTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
* * *
9733 CCTTAAAGTATTCAAGATGATCAATTCCTTAGAGCTATTTTTC-GAGCATTCCATGCTCGAGAAA
259 CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTA-TTTTCAGAACATTCCATGCTCGAGAAA
* *
9797 TTGCATCATTTGGTCCAAATAGTTTGTCATTTGTAACCAACTTTTGGTCTTTGAATTAAAAACTT
323 TCGCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTT
**
9862 ATTTACATGAGAATTGTATCTCTCTCAGTTCTTGGA
388 ATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
*
9898 TGAACTTTCAAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTTAGTTCCTTAAAGTATTCAA
1 TG--------AACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAA
* ** * * * * * * *
9963 GACAATCCATTAATTCAAG-CTATTTTTCGAGAAATCGATGC-TCGAGAAATTGTATCATTTGGT
58 GACGATCCATTCCTTCAAGAC-ATTTCTCGAGCATTCCATGCTTGGAGAAATCGCATCATTTGGT
* * * *
10026 TCAAATAGTTTGTCATTTGTAACCAACTTTTGGCCTTTCAATTAAAAACTTATTTACATGAGAAT
122 CCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAAT
* * * * * * * *
10091 TGCATCTCTCTTGCTTTTTGGATGAACTTTCGAACTTGTCAAACTTTTATGAGTTCTTTTATAAA
187 TGTATCTCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAAC
** * * *
10156 TTTAGTTCCTTAAAGTATTCAAGACGATCCATTCCTTTGAGCTATTTTTAGAACATTCCATGCTC
252 TTCGGTTCCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCAGAACATTCCATGCTC
* * * *
10221 GAGAAATCGTATCATTTTG-CCAAATATTTTGTCATTTTGTAAACAACTTTTGGCCTTTGAATTA
317 GAGAAATCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTA
* * * *
10285 AACACTTATTTATATGAGAATTTTATCTCTCTTGGCTCTTGGA
381 AAAACTTATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
* *
10328 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTTAAGACAATCC
1 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCC
* * * * ** *
10393 TTTCCTTCGAGACATTTCTCGATCATTCCATGCTTGGAAAAATCTTATCATTTGGTCTAAATAGT
66 ATTCCTTCAAGACATTTCTCGAGCATTCCATGCTTGGAGAAATCGCATCATTTGGTCCAAATAGT
*
10458 TTGTCATTTGTAACCAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATCTCT
131 TTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATCTCT
** * * *
10523 CCCAGTTCTTGGATGAACTTCCGAACCTATCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
196 CCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
* * * *
10588 TTAAAGTATTCAAGATGATCAATT-CTATCGAGCTATTTTCAGAGCATTACATGCTCAAGAAATC
261 TTAAAGTATTCAAGATGATCCATTCCT-TCGAGCTATTTTCAGAACATTCCATGCTCGAGAAATC
* *
10652 GCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAGCTTTTGGTCTTTGAATTAAAAACTTGT
325 GCATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTAT
*
10717 TTACATGAGAATTGTATCTCTGTTGGTTCTTGGA
390 TTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
** * * * ***
10751 TGAACTTGTCAAACTTTTATAAGTTCTTTTATAACTTTAGTTCCTTAGAGTATTCATGTTTATCC
1 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCC
* * * ** * *
10816 ATTCCTTCGAGGA-ATTTTTTGAGCATTCCATGCTCAG-GAAATTGCACCATTTGGTCCAAATAG
66 ATTCCTTC-AAGACATTTCTCGAGCATTCCATGCTTGGAGAAATCGCATCATTTGGTCCAAATAG
* * * * ** *
10879 TTGGTCATTTGCAAACAAATTTTGGTCTTTAAATTAAAATTTTATTTA-ATTGAGAATTGTTTCT
130 TTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACA-TGAGAATTGTATCT
* * * *
10943 CTCGTGGTTCTTGGACGAACTTCCGAACTTGTCAAATTTTTATGATTTCTTTTATAACTTCGGTT
194 CTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTT
** * * * * *
11008 AGTTAAAGTATTCAAGATGATCCTTTCCATCAAG-TAATTTCATGAACATTCCATGCTCGGGAAA
259 CCTTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCA-GAACATTCCATGCTCGAGAAA
* * * **
11072 TCGCATTATTTGGTCCAAATGGTTT-T-AGCTTGTAAACAAAATTTGGTCTTTGAATTAAAAACT
323 TCGCATCATTTGGTCCAAATAGTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACT
*
11135 TATTTACATGAGAATTGTATCTCTTTTGGTTC----A
387 TATTTACATGAGAATTGTATCTCTCTTGGTTCTTGGA
* * *
11168 T---CTTGTCAAACTTCTACGAGTTCTTTTATAACTTCGGTT-CTTGAAATTATTCAAGTA-GAT
1 TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTT-AAAGTATTCAAG-ACGAT
*** * * * * *
11228 TTTTTCCTTCGAGACATTTCTCGAACATTTCATGCTCGG-GAAATCGCATCATTTGGTTCAAATA
64 CCATTCCTTCAAGACATTTCTCGAGCATTCCATGCTTGGAGAAATCGCATCATTTGGTCCAAATA
* * * *
11292 GTTTGTCATTTTATAAACAACTTTTGATCTTTGAATT-AAAACTTATTTACGTGAGAATTGTATT
129 GTTTGTCA-TTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATC
* *
11356 TCTCATGGTTCTTGGACGAA----C--A--TGTCAAACTTTTACGAGTTCTTTTATAACTTCAGT
193 TCTCCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGT
11413 TC
258 TC
11415 TGATACGAGT
Statistics
Matches: 2358, Mismatches: 356, Indels: 171
0.82 0.12 0.06
Matches are distributed among these distances:
406 32 0.01
408 1 0.00
410 1 0.00
413 5 0.00
414 139 0.06
415 25 0.01
416 1 0.00
417 2 0.00
418 7 0.00
419 104 0.04
420 40 0.02
421 213 0.09
422 344 0.15
423 536 0.23
424 18 0.01
426 28 0.01
427 132 0.06
428 221 0.09
429 85 0.04
430 305 0.13
431 113 0.05
432 4 0.00
434 1 0.00
435 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.14, T:0.40
Consensus pattern (423 bp):
TGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCAGTTCCTTAAAGTATTCAAGACGATCC
ATTCCTTCAAGACATTTCTCGAGCATTCCATGCTTGGAGAAATCGCATCATTTGGTCCAAATAGT
TTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATTTACATGAGAATTGTATCTCT
CCTGGTTCTTGGACGAACTTCCGAACTTGTCAAACTTTTACGAGTTCTTTTATAACTTCGGTTCC
TTAAAGTATTCAAGATGATCCATTCCTTCGAGCTATTTTCAGAACATTCCATGCTCGAGAAATCG
CATCATTTGGTCCAAATAGTTTGTCATTTGTAAACAACTTTTGGTCTTTGAATTAAAAACTTATT
TACATGAGAATTGTATCTCTCTTGGTTCTTGGA
Done.