Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004746.1 Kokia drynarioides strain JFW-HI SEQ_118336, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 784

Length: 1307
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.26


Found at i:945 original size:15 final size:13

Alignment explanation


    Indices: 921--959  Score: 51
    Period size: 16  Copynumber: 2.8  Consensus size: 13

        911 TGCATATGCA

                         
        921 TACATGCATTCAT
          1 TACATGCATTCAT

                            
        934 TAGCATTGCATTTCAT
          1 TA-CA-TGCA-TTCAT

                      
        950 TACATGCATT
          1 TACATGCATT

        960 AAATTTCAAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 6
        0.79            0.00        0.21

Matches are distributed among these distances:
  13    4  0.17
  14    6  0.26
  15    6  0.26
  16    7  0.30

ACGTcount: A:0.28, C:0.21, G:0.10, T:0.41


Consensus pattern (13 bp):   
TACATGCATTCAT
Done.