Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004747.1 Kokia drynarioides strain JFW-HI SEQ_118337, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3352
ACGTcount: A:0.33, C:0.21, G:0.14, T:0.32


Found at i:2471 original size:15 final size:15

Alignment explanation


    Indices: 2451--2493  Score: 72
    Period size: 15  Copynumber: 3.0  Consensus size: 15

       2441 AACATATATT

                           
       2451 CAATAAAATGCAAAG
          1 CAATAAAATGCAAAG

                           
       2466 CAATAAAATGCAAA-
          1 CAATAAAATGCAAAG

                           
       2480 -AATAAAATGCAAAG
          1 CAATAAAATGCAAAG

       2494 GATCACAAAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  13   13  0.48
  15   14  0.52

ACGTcount: A:0.63, C:0.12, G:0.12, T:0.14


Consensus pattern (15 bp):   
CAATAAAATGCAAAG

Done.