Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004750.1 Kokia drynarioides strain JFW-HI SEQ_118340, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 746

Length: 1244
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29


Found at i:333 original size:45 final size:45

Alignment explanation


    Indices: 269--446  Score: 241
    Period size: 45  Copynumber: 4.0  Consensus size: 45

        259 GCATAGTTCA

                                   *      *      *       
        269 TCAAGCCAAGGATATCAGCCTCAGTTTGACAAGCCACTGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                                         
        314 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                                    *                  * 
        359 TCAAGCCAAGGATATCAGCCTCAAATTGACGAGCCACCGCAATAC
          1 TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

                  **           *  * *            *      
        404 T-ATAGGGAAGGATATCAGGCTGAGTTTGACGAGCCATCGCAAT
          1 TCA-AGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAAT

        447 ACTCTATTCC


Statistics
Matches: 120,  Mismatches: 12, Indels: 2
        0.90            0.09        0.01

Matches are distributed among these distances:
  44    1  0.01
  45  119  0.99

ACGTcount: A:0.32, C:0.27, G:0.22, T:0.19


Consensus pattern (45 bp):   
TCAAGCCAAGGATATCAGCCTCAATTTGACGAGCCACCGCAATGC

Found at i:915 original size:57 final size:57

Alignment explanation


    Indices: 844--965  Score: 228
    Period size: 57  Copynumber: 2.2  Consensus size: 57

        834 TTGGAAGATA

                                                   *                 
        844 TATAA-TTTTTATGCTAAAATGATATTTTAGTCTAATTTTAGAAACATCAAACGAAT
          1 TATAATTTTTTATGCTAAAATGATATTTTAGTCTAATTTCAGAAACATCAAACGAAT

                                                                     
        900 TATAATTTTTTATGCTAAAATGATATTTTAGTCTAATTTCAGAAACATCAAACGAAT
          1 TATAATTTTTTATGCTAAAATGATATTTTAGTCTAATTTCAGAAACATCAAACGAAT

                     
        957 TATAATTTT
          1 TATAATTTT

        966 GAATTCTTTA


Statistics
Matches: 64,  Mismatches: 1, Indels: 1
        0.97            0.02        0.02

Matches are distributed among these distances:
  56    5  0.08
  57   59  0.92

ACGTcount: A:0.40, C:0.09, G:0.08, T:0.43


Consensus pattern (57 bp):   
TATAATTTTTTATGCTAAAATGATATTTTAGTCTAATTTCAGAAACATCAAACGAAT
Done.