Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004758.1 Kokia drynarioides strain JFW-HI SEQ_118353, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7286
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33


Found at i:2708 original size:22 final size:23

Alignment explanation


    Indices: 2665--2708  Score: 72
    Period size: 23  Copynumber: 2.0  Consensus size: 23

       2655 TAAAAATAAC

                *                  
       2665 GAAATGAAATAACTAAAACCTAG
          1 GAAAAGAAATAACTAAAACCTAG

                                  
       2688 GAAAAGAAATAACT-AAACCTA
          1 GAAAAGAAATAACTAAAACCTA

       2709 AATTAAAAAG


Statistics
Matches: 20,  Mismatches: 1, Indels: 1
        0.91            0.05        0.05

Matches are distributed among these distances:
  22    7  0.35
  23   13  0.65

ACGTcount: A:0.59, C:0.14, G:0.11, T:0.16


Consensus pattern (23 bp):   
GAAAAGAAATAACTAAAACCTAG
Done.