Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004762.1 Kokia drynarioides strain JFW-HI SEQ_118363, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5556
ACGTcount: A:0.37, C:0.16, G:0.12, T:0.35


Found at i:1750 original size:3 final size:3

Alignment explanation


    Indices: 1742--1769  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

       1732 ATGTAAATTC

                                                 
       1742 AAT AAT AAT AAT AAT AAT AAT AAT AAT A
          1 AAT AAT AAT AAT AAT AAT AAT AAT AAT A

       1770 TTTTTTAAGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32


Consensus pattern (3 bp):   
AAT

Found at i:4906 original size:15 final size:15

Alignment explanation


    Indices: 4888--4917  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       4878 AATTTAAAAC

                   *       
       4888 TATAAAATTATTTTT
          1 TATAAAAATATTTTT

                           
       4903 TATAAAAATATTTTT
          1 TATAAAAATATTTTT

       4918 ATTTTCTGGA


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (15 bp):   
TATAAAAATATTTTT
Done.