Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004763.1 Kokia drynarioides strain JFW-HI SEQ_118364, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2393
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.35


Found at i:1592 original size:109 final size:109

Alignment explanation


    Indices: 1399--1619  Score: 406
    Period size: 109  Copynumber: 2.0  Consensus size: 109

       1389 AGGATATTCC

                                                  *                          
       1399 AAATTAATTTAATTGATATCTACCACATGTCAACAACTGCAGGCAGATTAATCACTATGAATTTT
          1 AAATTAATTTAATTGATATCTACCACATGTCAACAACTACAGGCAGATTAATCACTATGAATTTT

                                         *              
       1464 CAAAGCAAAAACAAAGCCCACAAGCTTCCGGAGGGGAATTGTAG
         66 CAAAGCAAAAACAAAGCCCACAAGCTTCCAGAGGGGAATTGTAG

                                     *                                       
       1508 AAATTAATTTAATTGATATCTACCATATGTCAACAACTACAGGCAGATTAATCACTATGAATTTT
          1 AAATTAATTTAATTGATATCTACCACATGTCAACAACTACAGGCAGATTAATCACTATGAATTTT

                          *                             
       1573 CAAAGCAAAAACAAGGCCCACAAGCTTCCAGAGGGGAATTGTAG
         66 CAAAGCAAAAACAAAGCCCACAAGCTTCCAGAGGGGAATTGTAG

               
       1617 AAA
          1 AAA

       1620 ACCCAAAAAA


Statistics
Matches: 108,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
 109  108  1.00

ACGTcount: A:0.41, C:0.19, G:0.16, T:0.25


Consensus pattern (109 bp):   
AAATTAATTTAATTGATATCTACCACATGTCAACAACTACAGGCAGATTAATCACTATGAATTTT
CAAAGCAAAAACAAAGCCCACAAGCTTCCAGAGGGGAATTGTAG
Done.