Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004768.1 Kokia drynarioides strain JFW-HI SEQ_118373, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7147
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33


Found at i:4275 original size:16 final size:15

Alignment explanation


    Indices: 4254--4289  Score: 54
    Period size: 16  Copynumber: 2.3  Consensus size: 15

       4244 TTATAACACT

                    *       
       4254 AAAAAAAATGAAAATG
          1 AAAAAAAAGGAAAA-G

                           
       4270 AAAAAAAAGGAAAAG
          1 AAAAAAAAGGAAAAG

                 
       4285 AAAAA
          1 AAAAA

       4290 TTATATATAT


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  15    6  0.32
  16   13  0.68

ACGTcount: A:0.81, C:0.00, G:0.14, T:0.06


Consensus pattern (15 bp):   
AAAAAAAAGGAAAAG
Done.