Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004771.1 Kokia drynarioides strain JFW-HI SEQ_118377, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6412
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:271 original size:26 final size:26

Alignment explanation


    Indices: 241--295  Score: 110
    Period size: 26  Copynumber: 2.1  Consensus size: 26

        231 AATGTTTCAT

                                      
        241 TGTCACCTAGGAAAGCATATTTCAAG
          1 TGTCACCTAGGAAAGCATATTTCAAG

                                      
        267 TGTCACCTAGGAAAGCATATTTCAAG
          1 TGTCACCTAGGAAAGCATATTTCAAG

               
        293 TGT
          1 TGT

        296 GTTGGTAATG


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  26   29  1.00

ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29


Consensus pattern (26 bp):   
TGTCACCTAGGAAAGCATATTTCAAG

Found at i:3576 original size:22 final size:22

Alignment explanation


    Indices: 3551--3593  Score: 86
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       3541 AAATGAGAAG

                                  
       3551 AATTGAATAGAACTCAAAGCAT
          1 AATTGAATAGAACTCAAAGCAT

                                 
       3573 AATTGAATAGAACTCAAAGCA
          1 AATTGAATAGAACTCAAAGCA

       3594 AATATGATAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.51, C:0.14, G:0.14, T:0.21


Consensus pattern (22 bp):   
AATTGAATAGAACTCAAAGCAT
Done.