Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004775.1 Kokia drynarioides strain JFW-HI SEQ_118385, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7235
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34


Found at i:6552 original size:23 final size:22

Alignment explanation


    Indices: 6512--6556  Score: 54
    Period size: 23  Copynumber: 2.0  Consensus size: 22

       6502 TAAATTTATG

                 *                 
       6512 CCTAAGCCCAAACCCTTTTAAAA
          1 CCTAAACCCAAACCC-TTTAAAA

                        **        
       6535 CCTAAACCCAAATTCTTTAAAA
          1 CCTAAACCCAAACCCTTTAAAA

       6557 TTAAATCCAA


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  22    7  0.37
  23   12  0.63

ACGTcount: A:0.42, C:0.31, G:0.02, T:0.24


Consensus pattern (22 bp):   
CCTAAACCCAAACCCTTTAAAA

Found at i:6694 original size:11 final size:11

Alignment explanation


    Indices: 6662--6702  Score: 55
    Period size: 11  Copynumber: 3.7  Consensus size: 11

       6652 ACCAAGTCAA

                      *
       6662 ACCGTTGACCA
          1 ACCGTTGACCG

               *       
       6673 ACCATTGACCG
          1 ACCGTTGACCG

                       
       6684 ACCGTTGACCG
          1 ACCGTTGACCG

            *       
       6695 GCCGTTGA
          1 ACCGTTGA

       6703 TTGTTGACTG


Statistics
Matches: 26,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  11   26  1.00

ACGTcount: A:0.22, C:0.34, G:0.24, T:0.20


Consensus pattern (11 bp):   
ACCGTTGACCG
Done.