Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004779.1 Kokia drynarioides strain JFW-HI SEQ_118391, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3934
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.32


Found at i:2182 original size:13 final size:13

Alignment explanation


    Indices: 2164--2196  Score: 66
    Period size: 13  Copynumber: 2.5  Consensus size: 13

       2154 GTGTACAGAT

                         
       2164 CTGACATATTGTA
          1 CTGACATATTGTA

                         
       2177 CTGACATATTGTA
          1 CTGACATATTGTA

                   
       2190 CTGACAT
          1 CTGACAT

       2197 CAGTACTCAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   20  1.00

ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36


Consensus pattern (13 bp):   
CTGACATATTGTA
Done.