Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004793.1 Kokia drynarioides strain JFW-HI SEQ_118418, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2304
ACGTcount: A:0.32, C:0.14, G:0.16, T:0.38


Found at i:677 original size:24 final size:24

Alignment explanation


    Indices: 650--702  Score: 88
    Period size: 24  Copynumber: 2.2  Consensus size: 24

        640 AATCTTCCAG

                                    
        650 TTAAAATCTGTTTATTTGTTTCAA
          1 TTAAAATCTGTTTATTTGTTTCAA

                 * *                
        674 TTAAACTTTGTTTATTTGTTTCAA
          1 TTAAAATCTGTTTATTTGTTTCAA

                 
        698 TTAAA
          1 TTAAA

        703 CTATTATTAG


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  24   27  1.00

ACGTcount: A:0.30, C:0.08, G:0.08, T:0.55


Consensus pattern (24 bp):   
TTAAAATCTGTTTATTTGTTTCAA

Found at i:703 original size:24 final size:24

Alignment explanation


    Indices: 658--704  Score: 94
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        648 AGTTAAAATC

                                    
        658 TGTTTATTTGTTTCAATTAAACTT
          1 TGTTTATTTGTTTCAATTAAACTT

                                   
        682 TGTTTATTTGTTTCAATTAAACT
          1 TGTTTATTTGTTTCAATTAAACT

        705 ATTATTAGTC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.26, C:0.09, G:0.09, T:0.57


Consensus pattern (24 bp):   
TGTTTATTTGTTTCAATTAAACTT
Done.