Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004795.1 Kokia drynarioides strain JFW-HI SEQ_118421, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8797
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.33


Found at i:2517 original size:31 final size:31

Alignment explanation


    Indices: 2479--2582  Score: 115
    Period size: 31  Copynumber: 3.4  Consensus size: 31

       2469 TTTAATAAAT

                                           
       2479 TTAATTTAATATTTATCTTGATAGTATTTTA
          1 TTAATTTAATATTTATCTTGATAGTATTTTA

                         *   *   *       * 
       2510 TTAATTTAATATTAAT-ATGAGA-TA-TTAA
          1 TTAATTTAATATTTATCTTGATAGTATTTTA

                    *          *            
       2538 TTCAATTTGATATTTATCTAGATAGTATTTTA
          1 TT-AATTTAATATTTATCTTGATAGTATTTTA

               *         
       2570 TTAGTTTAATATT
          1 TTAATTTAATATT

       2583 AATGTGATTA


Statistics
Matches: 57,  Mismatches: 12, Indels: 8
        0.74            0.16        0.10

Matches are distributed among these distances:
  28    5  0.09
  29   14  0.25
  30    7  0.12
  31   26  0.46
  32    5  0.09

ACGTcount: A:0.36, C:0.03, G:0.08, T:0.54


Consensus pattern (31 bp):   
TTAATTTAATATTTATCTTGATAGTATTTTA
Done.