Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004796.1 Kokia drynarioides strain JFW-HI SEQ_118422, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15927
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.30


Found at i:9423 original size:115 final size:115

Alignment explanation


    Indices: 9221--9449  Score: 386
    Period size: 115  Copynumber: 2.0  Consensus size: 115

       9211 CAAAACCTTT

                                                                       *    *
       9221 ATCTCAAAATACTTCGACCACCCCTATTATGATTCCATCCACAACTCCATCATCTTCATTCACAG
          1 ATCTCAAAATACTTCGACCACCCCTATTATGATTCCATCCACAACTCCATCATCTTCATCCACAA

            *                                  *              
       9286 GCCCGTTTTGTTTTTAACGACTGTGGCCAAAGACAGATATCACAACATAC
         66 ACCCGTTTTGTTTTTAACGACTGTGGCCAAAGACAAATATCACAACATAC

                                                *                        *   
       9336 ATCTCAAAATACTTCGACCACCCCTATTATGATTCCGTCCACAACTCCATCATCTTCATCCCCAA
          1 ATCTCAAAATACTTCGACCACCCCTATTATGATTCCATCCACAACTCCATCATCTTCATCCACAA

               *                             *               
       9401 ACCTGTTTTGTTTTTAACGACTGTGGCCAAAGATAAATATCACAACATA
         66 ACCCGTTTTGTTTTTAACGACTGTGGCCAAAGACAAATATCACAACATA

       9450 ATGCTAAAAC


Statistics
Matches: 106,  Mismatches: 8, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
 115  106  1.00

ACGTcount: A:0.31, C:0.30, G:0.10, T:0.29


Consensus pattern (115 bp):   
ATCTCAAAATACTTCGACCACCCCTATTATGATTCCATCCACAACTCCATCATCTTCATCCACAA
ACCCGTTTTGTTTTTAACGACTGTGGCCAAAGACAAATATCACAACATAC

Found at i:11141 original size:17 final size:18

Alignment explanation


    Indices: 11121--11160  Score: 64
    Period size: 18  Copynumber: 2.3  Consensus size: 18

      11111 TAAGTTTTCA

                              
      11121 TGCATTTT-TATTATCAC
          1 TGCATTTTATATTATCAC

                      *       
      11138 TGCATTTTATTTTATCAC
          1 TGCATTTTATATTATCAC

                 
      11156 TGCAT
          1 TGCAT

      11161 CATTTTGTTA


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  17    8  0.38
  18   13  0.62

ACGTcount: A:0.23, C:0.17, G:0.07, T:0.53


Consensus pattern (18 bp):   
TGCATTTTATATTATCAC

Done.