Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004806.1 Kokia drynarioides strain JFW-HI SEQ_118434, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2146
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.38


Found at i:1388 original size:22 final size:21

Alignment explanation


    Indices: 1363--1407  Score: 54
    Period size: 22  Copynumber: 2.1  Consensus size: 21

       1353 CGTTGGTCTG

                   *              
       1363 TCGTAGCTCCGTCGTTGCTCCA
          1 TCGTAGCGCCGTC-TTGCTCCA

                *          *     
       1385 TCGTCGCGCCGTCTTTCTCCA
          1 TCGTAGCGCCGTCTTGCTCCA

              
       1406 TC
          1 TC

       1408 AACGCAAAAC


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  21    9  0.45
  22   11  0.55

ACGTcount: A:0.07, C:0.40, G:0.20, T:0.33


Consensus pattern (21 bp):   
TCGTAGCGCCGTCTTGCTCCA
Done.