Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004807.1 Kokia drynarioides strain JFW-HI SEQ_118435, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4652
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30


Found at i:3357 original size:12 final size:12

Alignment explanation


    Indices: 3340--3383  Score: 54
    Period size: 12  Copynumber: 3.7  Consensus size: 12

       3330 GGAGGGGAAG

                        
       3340 GAAGAAGAGAAA
          1 GAAGAAGAGAAA

                        
       3352 GAAGAAGA-AAA
          1 GAAGAAGAGAAA

                 *       
       3363 GAAAGGAGAGAAA
          1 G-AAGAAGAGAAA

              *     
       3376 GAGGAAGA
          1 GAAGAAGA

       3384 TTTTGTTGCA


Statistics
Matches: 27,  Mismatches: 3, Indels: 4
        0.79            0.09        0.12

Matches are distributed among these distances:
  11    4  0.15
  12   19  0.70
  13    4  0.15

ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00


Consensus pattern (12 bp):   
GAAGAAGAGAAA
Done.