Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004813.1 Kokia drynarioides strain JFW-HI SEQ_118445, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 872

Length: 1454
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35


Found at i:161 original size:23 final size:23

Alignment explanation


    Indices: 109--307  Score: 204
    Period size: 23  Copynumber: 8.5  Consensus size: 23

         99 TATATGGAAC

                          *        
        109 AAACAGAGAGCACATA-AGTGCT
          1 AAACAGAGAGCACACACAGTGCT

                                      
        131 GGACAACAGAGAGCACACACAGTGCT
          1 --A-AACAGAGAGCACACACAGTGCT

                                   
        157 AAACAGAGAGCACACACAGTGCT
          1 AAACAGAGAGCACACACAGTGCT

               *      * *   *   *  
        180 AAATAGAGAGTATACAAAGTACT
          1 AAACAGAGAGCACACACAGTGCT

              **            *      
        203 AATTAGAGAGCACACAAAGTGCT
          1 AAACAGAGAGCACACACAGTGCT

              *                    
        226 AATCAGAGAGCACACACAGTGCT
          1 AAACAGAGAGCACACACAGTGCT

                             *  *     
        249 AATAACAGAGAGCACGAGA-TGTGCT
          1 -A-AACAGAGAGCAC-ACACAGTGCT

                   *               
        274 AAACAGATAGCACACACAGTGCT
          1 AAACAGAGAGCACACACAGTGCT

              *        
        297 AATCAGAGAGC
          1 AAACAGAGAGC

        308 GCGCTAGTGT


Statistics
Matches: 149,  Mismatches: 20, Indels: 13
        0.82            0.11        0.07

Matches are distributed among these distances:
  22    2  0.01
  23  105  0.70
  24    4  0.03
  25   30  0.20
  26    8  0.05

ACGTcount: A:0.43, C:0.21, G:0.23, T:0.14


Consensus pattern (23 bp):   
AAACAGAGAGCACACACAGTGCT

Done.