genome.fa.s4816.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004816.1 Kokia drynarioides strain JFW-HI SEQ_118449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48056

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71--134	24	2.9	21	80	13	67	48	1	1	48	1.20
1780--2097	113	2.8	112	87	2	451	26	12	18	41	1.87
6171--6235	29	2.2	28	76	12	69	56	7	3	32	1.43
7155--7194	8	5.0	8	91	8	64	65	0	0	35	0.93
7501--7557	20	2.8	20	83	2	78	12	5	5	77	1.11
8685--8767	43	2.0	42	92	4	141	30	36	8	25	1.85
9129--9199	28	2.5	28	76	0	79	35	26	15	22	1.94
9172--9256	30	2.8	30	76	1	98	30	22	15	31	1.95
10753--10853	51	2.0	52	90	5	161	25	24	13	35	1.93
13193--13238	23	2.0	23	100	0	92	39	21	4	34	1.73
14130--14252	39	3.1	39	72	9	122	43	19	8	29	1.80
14093--14244	80	1.9	78	88	5	225	40	19	8	30	1.82
15850--15948	43	2.3	43	83	0	126	29	21	20	29	1.98
18608--18642	18	1.9	18	88	0	52	42	22	14	20	1.88
21239--21509	136	2.0	136	86	2	384	32	14	27	25	1.95
26604--26779	52	3.4	52	84	0	226	34	23	13	29	1.92
29940--30014	34	2.2	34	95	0	132	42	0	9	48	1.35
31025--31076	24	2.1	25	82	3	61	42	11	34	11	1.77
37241--37276	14	2.6	14	90	0	54	11	16	2	69	1.29
39633--39968	52	6.5	52	88	1	451	29	14	23	32	1.94
39638--39938	103	2.9	104	90	1	469	30	13	23	32	1.93
39633--39934	155	1.9	156	88	0	453	29	13	23	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40486--40532	21	2.2	21	100	0	94	21	12	23	42	1.87
40486--40540	21	2.6	21	94	0	83	25	10	23	40	1.87
40905--40934	14	2.1	15	93	6	53	46	6	23	23	1.75
46597--46630	18	1.9	18	88	5	52	50	0	0	50	1.00

Tables:   1

The End!