Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01004821.1 Kokia drynarioides strain JFW-HI SEQ_118458, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 22441
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Found at i:777 original size:29 final size:29
Alignment explanation
Indices: 717--1040 Score: 282
Period size: 29 Copynumber: 11.1 Consensus size: 29
707 AGATACCCGA
* * *
717 GGGT-AAAATGGTAATTTTGGGAAAATTTAG
1 GGGTAAAAATGG-AATTTTTGG-AAGTTCAG
* *
747 GGTTAAAAATGGGATTTTTGGAAGTTCAG
1 GGGTAAAAATGGAATTTTTGGAAGTTCAG
* *
776 GGGTAAAAATGAAATTTTTGGAAGTTTTAG
1 GGGTAAAAATGGAATTTTTGGAAG-TTCAG
* * *
806 GGTTAAAAAT-GAGATTTTTTGAAGTTCGG
1 GGGTAAAAATGGA-ATTTTTGGAAGTTCAG
*
835 GGGTAAAAATGAAATTTTTGGAAGTTTC-G
1 GGGTAAAAATGGAATTTTTGGAAG-TTCAG
* *
864 GGGTTAAAAATGGGATTTTTGAAAGTTC-G
1 GGG-TAAAAATGGAATTTTTGGAAGTTCAG
*** *
893 AGGGTAAAAATGGAATTTTCAAAAGTTCGG
1 -GGGTAAAAATGGAATTTTTGGAAGTTCAG
* *
923 GGGTAAAAATAGAATTTTTGGAAGTT-TG
1 GGGTAAAAATGGAATTTTTGGAAGTTCAG
* **
951 AGGGTGAAAATGGAATTTTTGGAAGTTTTG
1 -GGGTAAAAATGGAATTTTTGGAAGTTCAG
* * *
981 GGGTTAAAATTGGGATTTTTGGAA-TTCGG
1 GGG-TAAAAATGGAATTTTTGGAAGTTCAG
* *
1010 GGGTAAAAATGGTATTTTTGGAAGTTTAG
1 GGGTAAAAATGGAATTTTTGGAAGTTCAG
1039 GG
1 GG
1041 ACTTTCGGGG
Statistics
Matches: 243, Mismatches: 39, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
28 19 0.08
29 139 0.57
30 78 0.32
31 7 0.03
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (29 bp):
GGGTAAAAATGGAATTTTTGGAAGTTCAG
Found at i:1028 original size:58 final size:59
Alignment explanation
Indices: 717--1036 Score: 385
Period size: 59 Copynumber: 5.5 Consensus size: 59
707 AGATACCCGA
* ** * *
717 GGGT-AAAATGGTAATTTTGGGAAAATTTAGGGTTAAAAATGGGATTTTTGGAAGTTCAG
1 GGGTAAAAATGG-AATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGAAGTTCGG
* * * *
776 GGGTAAAAATGAAATTTTTGGAAGTTTTAGGGTTAAAAATGAGATTTTTTGAAGTTCGG
1 GGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGAAGTTCGG
* * * *
835 GGGTAAAAATGAAATTTTTGGAAGTTTCGGGGTTAAAAATGGGATTTTTGAAAGTTCGA
1 GGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGAAGTTCGG
*** * * * * * *
894 GGGTAAAAATGGAATTTTCAAAAG-TTCGGGGGTAAAAATAGAATTTTTGGAAGTTTGA
1 GGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGAAGTTCGG
* *
952 GGGTGAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAATTGGGATTTTTGGAA-TTCGG
1 GGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGAAGTTCGG
*
1010 GGGTAAAAATGGTATTTTTGGAAGTTT
1 GGGTAAAAATGGAATTTTTGGAAGTTT
1037 AGGGACTTTC
Statistics
Matches: 224, Mismatches: 35, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
58 77 0.34
59 141 0.63
60 6 0.03
ACGTcount: A:0.33, C:0.02, G:0.30, T:0.35
Consensus pattern (59 bp):
GGGTAAAAATGGAATTTTTGGAAGTTTTGGGGTTAAAAATGGGATTTTTGGAAGTTCGG
Found at i:2877 original size:17 final size:17
Alignment explanation
Indices: 2857--2919 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
2847 TAAATATATG
* *
2857 ATAATTTTAAACTTAAA
1 ATAAATTTAAATTTAAA
*
2874 ATAAATTTAAATTTTTAA
1 ATAAATTTAAA-TTTAAA
* *
2892 ACAAATTTAATTTTAAA
1 ATAAATTTAAATTTAAA
*
2909 ATAATTTTAAA
1 ATAAATTTAAA
2920 GGGAGTATGG
Statistics
Matches: 36, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
17 23 0.64
18 13 0.36
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
ATAAATTTAAATTTAAA
Found at i:11915 original size:26 final size:25
Alignment explanation
Indices: 11886--11948 Score: 101
Period size: 25 Copynumber: 2.5 Consensus size: 25
11876 CACACCTAAT
11886 ACGATTTTGACGAAGAAGCAACAAAA
1 ACGATTTTGA-GAAGAAGCAACAAAA
*
11912 ACGATTTCGAGAAGAAGCAACAAAA
1 ACGATTTTGAGAAGAAGCAACAAAA
11937 ACGATTTT-AGAA
1 ACGATTTTGAGAA
11949 CTTAAAAACG
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
24 4 0.11
25 22 0.63
26 9 0.26
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.17
Consensus pattern (25 bp):
ACGATTTTGAGAAGAAGCAACAAAA
Found at i:15340 original size:13 final size:13
Alignment explanation
Indices: 15322--15356 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
15312 TTCGAGCACT
15322 TGTGTGTGCAAGG
1 TGTGTGTGCAAGG
15335 TGTGTGTGCAAGG
1 TGTGTGTGCAAGG
15348 TGTGTGTGC
1 TGTGTGTGC
15357 TTTATCAAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.11, C:0.09, G:0.46, T:0.34
Consensus pattern (13 bp):
TGTGTGTGCAAGG
Found at i:18515 original size:21 final size:21
Alignment explanation
Indices: 18482--18524 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
18472 ATATATCAAT
18482 AATGCAATAAC-AAATAGACAA
1 AATGCAATAACAAAATA-ACAA
* *
18503 AATGCATTCACAAAATAACAA
1 AATGCAATAACAAAATAACAA
18524 A
1 A
18525 TCAAATAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.60, C:0.16, G:0.07, T:0.16
Consensus pattern (21 bp):
AATGCAATAACAAAATAACAA
Found at i:20682 original size:46 final size:46
Alignment explanation
Indices: 20586--20861 Score: 344
Period size: 46 Copynumber: 6.1 Consensus size: 46
20576 CTATTATGAT
* * * *
20586 ATGGTAGCTTCAATCTGCCCCTCTTGATTTTAGGGATAAACGATTGG
1 ATGGTGGCTTCAATCTGCCCCTCTTGA-CTTAGGGGTAAAAGATTGG
* * * *
20633 ATAGTAGCTTCAATTTGCCCTTCTTGACTTAGGGGTAAAAGATTGG
1 ATGGTGGCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGG
* * * * * *
20679 ATAGTGACCTCAATTTTCCCCTCTTGACTTAGGGATAAAAGATTGG
1 ATGGTGGCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGG
* * *
20725 ATGGTGGCTTCAATCTGACCTTCTTGACTTAGGGGTAAAAGATTGA
1 ATGGTGGCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGG
20771 ATGGTGGCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGG
1 ATGGTGGCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGG
* *
20817 ATGGTGGCTTCAATTTG-CCCTC-TAAC-TA-GGGTAAAAGATTGG
1 ATGGTGGCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGG
20859 ATG
1 ATG
20862 CTTTAATCTG
Statistics
Matches: 203, Mismatches: 26, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
42 17 0.08
43 2 0.01
44 3 0.01
45 5 0.02
46 152 0.75
47 24 0.12
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (46 bp):
ATGGTGGCTTCAATCTGCCCCTCTTGACTTAGGGGTAAAAGATTGG
Found at i:20926 original size:40 final size:39
Alignment explanation
Indices: 20714--21285 Score: 309
Period size: 40 Copynumber: 14.2 Consensus size: 39
20704 GACTTAGGGA
* *
20714 TAAAAGATTGGATGGTGGCTTCAATCTGACCTTCTTGACTTAGGGG
1 TAAAAGATTGG-TGGT--CTTCAATCTG-CCCTC-TGA--TCGGGG
* *
20760 TAAAAGATTGAATGGTGGCTTCAATCTGCCCCTCTTGACTTAGGGG
1 TAAAAGATTG-GTGGT--CTTCAATCTG-CCCTC-TGA--TCGGGG
* * *
20806 TAAAAGATTGGATGGTGGCTTCAATTTGCCCTCT-AACTAGGG
1 TAAAAGATTGG-TGGT--CTTCAATCTGCCCTCTGATC-GGGG
*
20848 TAAAAGATTGGAT-G-CTTTAATCTGCCC-CATGATCGGGG
1 TAAAAGATTGG-TGGTCTTCAATCTGCCCTC-TGATCGGGG
* * * *
20886 TAAGAGATTGGTGCGTCTTCAATCTACCTTCTGATTGGGG
1 TAAAAGATTGGTG-GTCTTCAATCTGCCCTCTGATCGGGG
* *
20926 TAAAATATTGGAT-G-CTTCAATTTGCCC-CATGATCGGGG
1 TAAAAGATTGG-TGGTCTTCAATCTGCCCTC-TGATCGGGG
* * * **
20964 TAAGAGATTGGTGTGTCTTCAATCTACCCTTTGA-CTAAGG
1 TAAAAGATTGGTG-GTCTTCAATCTGCCCTCTGATC-GGGG
*
21004 TAAAAGATTGGAGG-CTTCAATCTGCCC-CATGATCGGGG
1 TAAAAGATTGGTGGTCTTCAATCTGCCCTC-TGATCGGGG
* * * *
21042 TAAGAGAATGGTGTGTCTTCAATCTGCCCTCT-AACTAGGG
1 TAAAAGATTGGTG-GTCTTCAATCTGCCCTCTGATC-GGGG
* *
21082 TAAAAGATTGGAT-G-CTTCAATCTGCCCTATGATCGGAG
1 TAAAAGATTGG-TGGTCTTCAATCTGCCCTCTGATCGGGG
* * **
21120 TAAGAGATTGGTGTGTCTTCAATCTGCCCTCTAATTAGGG
1 TAAAAGATTGGTG-GTCTTCAATCTGCCCTCTGATCGGGG
* * * *
21160 TAAAAGATTGGATTG-CTTTAATCTACCC-CATGGTCGGGG
1 TAAAAGATTGG-TGGTCTTCAATCTGCCCTC-TGATCGGGG
* * * * * *
21199 TAAAAGATCGGATGATCTTCAATCT-ACCTCATGGTTGAGG
1 TAAAAGATTGG-TGGTCTTCAATCTGCCCTC-TGATCGGGG
*
21239 TAAAAGATTAGT--TACTTCAATCTGCCC-CATGATCGGGG
1 TAAAAGATTGGTGGT-CTTCAATCTGCCCTC-TGATCGGGG
*
21277 TAAGAGATT
1 TAAAAGATT
21286 TTTACTTTGC
Statistics
Matches: 418, Mismatches: 75, Indels: 74
0.74 0.13 0.13
Matches are distributed among these distances:
37 6 0.01
38 132 0.32
39 48 0.11
40 136 0.33
41 6 0.01
42 16 0.04
43 1 0.00
44 1 0.00
45 5 0.01
46 67 0.16
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (39 bp):
TAAAAGATTGGTGGTCTTCAATCTGCCCTCTGATCGGGG
Found at i:20929 original size:78 final size:78
Alignment explanation
Indices: 20802--21285 Score: 587
Period size: 78 Copynumber: 6.2 Consensus size: 78
20792 TCTTGACTTA
* * * * * * *
20802 GGGGTAAAAGATTGGATGGTGGCTTCAATTTGCCCTCTAACTAGGGTAAAAGATTGGATGCTTTA
1 GGGGTAAGAGATTGG-T-GTGTCTTCAATCTACCCTCTGATTAGGGTAAAAGATTGGATGCTTCA
20867 ATCTGCCCCATGATC
64 ATCTGCCCCATGATC
* * * *
20882 GGGGTAAGAGATTGGTGCGTCTTCAATCTACCTTCTGATTGGGGTAAAATATTGGATGCTTCAAT
1 GGGGTAAGAGATTGGTGTGTCTTCAATCTACCCTCTGATTAGGGTAAAAGATTGGATGCTTCAAT
*
20947 TTGCCCCATGATC
66 CTGCCCCATGATC
* * * *
20960 GGGGTAAGAGATTGGTGTGTCTTCAATCTACCCTTTGACTAAGGTAAAAGATTGGAGGCTTCAAT
1 GGGGTAAGAGATTGGTGTGTCTTCAATCTACCCTCTGATTAGGGTAAAAGATTGGATGCTTCAAT
21025 CTGCCCCATGATC
66 CTGCCCCATGATC
* * * *
21038 GGGGTAAGAGAATGGTGTGTCTTCAATCTGCCCTCTAACTAGGGTAAAAGATTGGATGCTTCAAT
1 GGGGTAAGAGATTGGTGTGTCTTCAATCTACCCTCTGATTAGGGTAAAAGATTGGATGCTTCAAT
*
21103 CTGCCCTATGATC
66 CTGCCCCATGATC
* * * *
21116 GGAGTAAGAGATTGGTGTGTCTTCAATCTGCCCTCTAATTAGGGTAAAAGATTGGATTGCTTTAA
1 GGGGTAAGAGATTGGTGTGTCTTCAATCTACCCTCTGATTAGGGTAAAAGATTGGA-TGCTTCAA
* *
21181 TCTACCCCATGGTC
65 TCTGCCCCATGATC
* * * * * * *
21195 GGGGTAAAAGATCGGATG-ATCTTCAATCTA-CCTCATGGTT-GAGGTAAAAGATTAGTTACTTC
1 GGGGTAAGAGATTGG-TGTGTCTTCAATCTACCCTC-TGATTAG-GGTAAAAGATTGGATGCTTC
21257 AATCTGCCCCATGATC
63 AATCTGCCCCATGATC
21273 GGGGTAAGAGATT
1 GGGGTAAGAGATT
21286 TTTACTTTGC
Statistics
Matches: 350, Mismatches: 50, Indels: 10
0.85 0.12 0.02
Matches are distributed among these distances:
78 278 0.79
79 56 0.16
80 16 0.05
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (78 bp):
GGGGTAAGAGATTGGTGTGTCTTCAATCTACCCTCTGATTAGGGTAAAAGATTGGATGCTTCAAT
CTGCCCCATGATC
Found at i:21478 original size:42 final size:42
Alignment explanation
Indices: 21415--21523 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
21405 TTTAGGGACA
* * *
21415 TAAGATTCGCCTTTACAGCTTCAATCTAGCCCTT-TATAG-CTT
1 TAAGATTCGCCTTTGCGGCTTCAATCT-GCCCTTCTACAGTC-T
* **
21457 TGAGATTCGCCTTTGCGGCTTCAATCTGCTTTTCTACAGTCT
1 TAAGATTCGCCTTTGCGGCTTCAATCTGCCCTTCTACAGTCT
21499 TAAGATTCGCCTTTGCGGCTTCAAT
1 TAAGATTCGCCTTTGCGGCTTCAAT
21524 ATGCTTTTTC
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
41 4 0.07
42 53 0.91
43 1 0.02
ACGTcount: A:0.19, C:0.26, G:0.17, T:0.39
Consensus pattern (42 bp):
TAAGATTCGCCTTTGCGGCTTCAATCTGCCCTTCTACAGTCT
Found at i:21597 original size:49 final size:49
Alignment explanation
Indices: 21544--21872 Score: 234
Period size: 49 Copynumber: 6.7 Consensus size: 49
21534 TCATCCTCAG
* * *
21544 GGTATAAGATTCGCCGTTGTGGCCTCAATCTTTCCCATCACATCTCTAA
1 GGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCATCATATCTCTAA
* * * * * *
21593 GGTATAAGGTTCACCGTTACGGCTTCAACCTTTCCC-TCCATATCTCCAC
1 GGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCAT-CATATCTCTAA
* ** * * *
21642 GGTACAAGATTCGATGTTGCGG-TTCAATCTTTCCCATTATTTTTCTAA
1 GGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCATCATATCTCTAA
* * * * * * ***
21690 GGTATAAGGTTCGCTGTTGCGACTTCAACCTTTCCCTTCATATTTCCGT
1 GGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCATCATATCTCTAA
* * ** ** * *
21739 GGTACAAGATTTGTTGTTGCAACTTCAATCTTTCCCATTATGTCTCTAA
1 GGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCATCATATCTCTAA
* * * * *
21788 GGTACAAGGTTCGTCATTGCGGCTTCAA-CTTTTCCC-TCCATATCTCTAG
1 GGTATAAGATTCGCCGTTGCGGCTTCAATC-TTTCCCAT-CATATCTCTAA
* * * *
21837 GGTATTAGATTTGCCTTTGTGGCTTCAATCTTTCCC
1 GGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCC
21873 TTCAAACCTG
Statistics
Matches: 213, Mismatches: 61, Indels: 12
0.74 0.21 0.04
Matches are distributed among these distances:
48 39 0.18
49 173 0.81
50 1 0.00
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (49 bp):
GGTATAAGATTCGCCGTTGCGGCTTCAATCTTTCCCATCATATCTCTAA
Found at i:21690 original size:97 final size:98
Alignment explanation
Indices: 21568--21833 Score: 336
Period size: 97 Copynumber: 2.7 Consensus size: 98
21558 CGTTGTGGCC
* * * *
21568 TCAATCTTTCCCATCACATCTCTAAGGTATAAGGTTCACCGTTACGGCTTCAACCTTTCCCTCCA
1 TCAATCTTTCCCATTATATCTCTAAGGTATAAGGTTCGCCGTTGCGGCTTCAACCTTTCCCTCCA
**
21633 TATCTCCACGGTACAAGATTCGATGTTGC-GGT
66 TATCTCCACGGTACAAGATTCGATGTTGCAACT
* * * * *
21665 TCAATCTTTCCCATTATTTTTCTAAGGTATAAGGTTCGCTGTTGCGACTTCAACCTTTCCCTTCA
1 TCAATCTTTCCCATTATATCTCTAAGGTATAAGGTTCGCCGTTGCGGCTTCAACCTTTCCCTCCA
* ** * *
21730 TATTTCCGTGGTACAAGATTTGTTGTTGCAACT
66 TATCTCCACGGTACAAGATTCGATGTTGCAACT
* * * * *
21763 TCAATCTTTCCCATTATGTCTCTAAGGTACAAGGTTCGTCATTGCGGCTTCAACTTTTCCCTCCA
1 TCAATCTTTCCCATTATATCTCTAAGGTATAAGGTTCGCCGTTGCGGCTTCAACCTTTCCCTCCA
21828 TATCTC
66 TATCTC
21834 TAGGGTATTA
Statistics
Matches: 142, Mismatches: 26, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
97 80 0.56
98 62 0.44
ACGTcount: A:0.21, C:0.27, G:0.15, T:0.37
Consensus pattern (98 bp):
TCAATCTTTCCCATTATATCTCTAAGGTATAAGGTTCGCCGTTGCGGCTTCAACCTTTCCCTCCA
TATCTCCACGGTACAAGATTCGATGTTGCAACT
Found at i:21863 original size:98 final size:96
Alignment explanation
Indices: 21539--21872 Score: 339
Period size: 98 Copynumber: 3.4 Consensus size: 96
21529 TTTTCTCATC
* * * * * *
21539 CTCAGGGTATAAGATTCGCCGTTGTGGCCTCAATCTTTCCCATCACATCTCTAAGGTATAAGGTT
1 CTCAGGGTACAAGATTCGCTGTTGCGGCTTCAATCTTTCCCATTATATCTCTAAGGTATAAGGTT
* *
21604 CACCGTTACGGCTTCAACCTTTCCCTCCATAT
66 C-GCGTTGCGGCTTCAACCTTTCCCTCCATAT
* * * *
21636 CTCCACGGTACAAGATTCGATGTTGCGG-TTCAATCTTTCCCATTATTTTTCTAAGGTATAAGGT
1 CT-CAGGGTACAAGATTCGCTGTTGCGGCTTCAATCTTTCCCATTATATCTCTAAGGTATAAGGT
* *
21700 TCGCTGTTGCGACTTCAACCTTTCCCTTCATAT
65 TCGC-GTTGCGGCTTCAACCTTTCCCTCCATAT
* * * * ** * *
21733 TTCCGTGGTACAAGATTTGTTGTTGCAACTTCAATCTTTCCCATTATGTCTCTAAGGTACAAGGT
1 CTCAG-GGTACAAGATTCGCTGTTGCGGCTTCAATCTTTCCCATTATATCTCTAAGGTATAAGGT
* *
21798 TCGTCATTGCGGCTTCAACTTTTCCCTCCATAT
65 TCG-CGTTGCGGCTTCAACCTTTCCCTCCATAT
** * *
21831 CTCTAGGGTATTAGATTTGCCT-TTGTGGCTTCAATCTTTCCC
1 CTC-AGGGTACAAGATTCG-CTGTTGCGGCTTCAATCTTTCCC
21873 TTCAAACCTG
Statistics
Matches: 194, Mismatches: 36, Indels: 13
0.80 0.15 0.05
Matches are distributed among these distances:
96 2 0.01
97 79 0.41
98 110 0.57
99 3 0.02
ACGTcount: A:0.20, C:0.26, G:0.17, T:0.37
Consensus pattern (96 bp):
CTCAGGGTACAAGATTCGCTGTTGCGGCTTCAATCTTTCCCATTATATCTCTAAGGTATAAGGTT
CGCGTTGCGGCTTCAACCTTTCCCTCCATAT
Done.