Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004827.1 Kokia drynarioides strain JFW-HI SEQ_118469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 937

Length: 1562
ACGTcount: A:0.28, C:0.24, G:0.11, T:0.37


Found at i:1118 original size:59 final size:59

Alignment explanation


    Indices: 588--1110  Score: 566
    Period size: 59  Copynumber: 8.8  Consensus size: 59

        578 ACCCTCGAAC

                      *                                *              **    
        588 TTCCAAAAATCA-CATTTTTGA-CCTCGAACTTTCCAAAAATTACCA-TTTT-ACCCCCGAAC-
          1 TTCCAAAAATTACCA-TTTT-ACCCTCGAAC-TTCCAAAAA-TCCCATTTTTGA-CCCTAAACT

                       *                       *       *               *   *
        647 TTCCAAAAA-TCCCATTTTTGACCC-CGAACCTTCTAAAAATTACCA-TTTT-ACCCTCGAACC
          1 TTCCAAAAATTACCA-TTTT-ACCCTCGAA-CTTCCAAAAA-TCCCATTTTTGACCCT-AAACT

                                                                  *    *
        707 TTCCAAAAATTACCATTTTACCC-CTGAACTTCCAAAAATCCCATTTTTGACCCCAAACC
          1 TTCCAAAAATTACCATTTTACCCTC-GAACTTCCAAAAATCCCATTTTTGACCCTAAACT

               *                     *             **                  
        766 TTCTAAAAATTACCATTTTACCCTCAAACTTCCAAAAATATCATTTTTGACCCTAAACT
          1 TTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCTAAACT

                                                          *             
        825 TTCCAAAAATTACCATTTTATCCC-CGAACTTCCAAAAATCCCATTCTTGACCCTAAACT
          1 TTCCAAAAATTACCATTTTA-CCCTCGAACTTCCAAAAATCCCATTTTTGACCCTAAACT

                                      *           *       *             
        884 TTCCAAAAATTACCATTTTATCCC-CAAACTTCCAAAATTCCCATTCTTGACCCTAAACT
          1 TTCCAAAAATTACCATTTTA-CCCTCGAACTTCCAAAAATCCCATTTTTGACCCTAAACT

                   *                   *                 *             
        943 TTCCAAATATTACCATTTTACCCTCGAGCTTCCAAAAATCCCATTCTTGACCCTAAACT
          1 TTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCTAAACT

                 *                     *                         **   *
       1002 TTCCATAAATTACCATTTTACCCTCGAGCTTCCAAAAATCCCATTTTTGACCCCGAACC
          1 TTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCTAAACT

               *          *                  *       *        
       1061 TTCTAAAAATTACCGTTTTACCCTCGAACTTCCCAAAATCCTATTTTTGA
          1 TTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATCCCATTTTTGA

       1111 TTCCGAACAT


Statistics
Matches: 414,  Mismatches: 38, Indels: 24
        0.87            0.08        0.05

Matches are distributed among these distances:
  58   10  0.02
  59  373  0.90
  60   27  0.07
  61    4  0.01

ACGTcount: A:0.33, C:0.31, G:0.04, T:0.32


Consensus pattern (59 bp):   
TTCCAAAAATTACCATTTTACCCTCGAACTTCCAAAAATCCCATTTTTGACCCTAAACT

Done.