Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004832.1 Kokia drynarioides strain JFW-HI SEQ_118475, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7890
ACGTcount: A:0.32, C:0.16, G:0.17, T:0.35


Found at i:2595 original size:2 final size:2

Alignment explanation


    Indices: 2588--2614  Score: 54
    Period size: 2  Copynumber: 13.5  Consensus size: 2

       2578 CTCAGACATC

                                                    
       2588 CT CT CT CT CT CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT C

       2615 CCTCCCTTTC


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   25  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
CT

Found at i:7585 original size:20 final size:21

Alignment explanation


    Indices: 7560--7602  Score: 61
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       7550 ATTCAAGGGA

                   *      *      
       7560 TGAAATATATTT-TTTATAAT
          1 TGAAATAAATTTCTGTATAAT

                                 
       7580 TGAAATAAATTTCTGTATAAT
          1 TGAAATAAATTTCTGTATAAT

              
       7601 TG
          1 TG

       7603 TAAAACGGGT


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  20   11  0.55
  21    9  0.45

ACGTcount: A:0.40, C:0.02, G:0.09, T:0.49


Consensus pattern (21 bp):   
TGAAATAAATTTCTGTATAAT

Done.