Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004838.1 Kokia drynarioides strain JFW-HI SEQ_118484, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9209
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36


Found at i:275 original size:23 final size:22

Alignment explanation


    Indices: 248--297  Score: 57
    Period size: 23  Copynumber: 2.2  Consensus size: 22

        238 ATAAATAAAT

                                    
        248 ATTAATAGTTT-TATTTAATCATA
          1 ATTAATA-TTTGT-TTTAATCATA

                               *   
        271 ATTAAATATTTGTTTTAATTATA
          1 ATT-AATATTTGTTTTAATCATA

                
        294 ATTA
          1 ATTA

        298 TTTTTTAGAA


Statistics
Matches: 24,  Mismatches: 1, Indels: 5
        0.80            0.03        0.17

Matches are distributed among these distances:
  22    1  0.04
  23   18  0.75
  24    5  0.21

ACGTcount: A:0.40, C:0.02, G:0.04, T:0.54


Consensus pattern (22 bp):   
ATTAATATTTGTTTTAATCATA
Done.