Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004842.1 Kokia drynarioides strain JFW-HI SEQ_118491, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5403
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.34


Found at i:342 original size:36 final size:36

Alignment explanation


    Indices: 291--384  Score: 145
    Period size: 36  Copynumber: 2.6  Consensus size: 36

        281 CCATGCTTAA

                                                 
        291 TCCCTGTTGAA-CCAAAGGTCATGATGCTCATTTCAC
          1 TCCCTGTT-AACCCAAAGGTCATGATGCTCATTTCAC

                                             *  
        327 TCCCTGTTAACCCAAAGGTCATGATGCTCATTTTAC
          1 TCCCTGTTAACCCAAAGGTCATGATGCTCATTTCAC

                    *        *    
        363 TCCCTGTTGACCCAAAGATCAT
          1 TCCCTGTTAACCCAAAGGTCAT

        385 CTTTGTTATC


Statistics
Matches: 54,  Mismatches: 3, Indels: 2
        0.92            0.05        0.03

Matches are distributed among these distances:
  35    2  0.04
  36   52  0.96

ACGTcount: A:0.26, C:0.29, G:0.15, T:0.31


Consensus pattern (36 bp):   
TCCCTGTTAACCCAAAGGTCATGATGCTCATTTCAC
Done.