Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004847.1 Kokia drynarioides strain JFW-HI SEQ_118504, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11303
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.35


Found at i:3511 original size:21 final size:21

Alignment explanation


    Indices: 3460--3512  Score: 61
    Period size: 21  Copynumber: 2.4  Consensus size: 21

       3450 AAAGATAAAT

                                   
       3460 TAAATATTTCAATACATGTGGCA
          1 TAAA-ATTT-AATACATGTGGCA

               *               **
       3483 TAATATTTAATACATGTGGGG
          1 TAAAATTTAATACATGTGGCA

                     
       3504 TAAAATTTA
          1 TAAAATTTA

       3513 TTAGTATTAA


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  21   19  0.73
  22    4  0.15
  23    3  0.12

ACGTcount: A:0.40, C:0.08, G:0.15, T:0.38


Consensus pattern (21 bp):   
TAAAATTTAATACATGTGGCA

Found at i:6168 original size:2 final size:2

Alignment explanation


    Indices: 6161--6207  Score: 76
    Period size: 2  Copynumber: 23.5  Consensus size: 2

       6151 TTGATAAAAC

                                                             *  *         
       6161 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TG TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                   
       6203 TA TA T
          1 TA TA T

       6208 GTGTGTGTGT


Statistics
Matches: 43,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   43  1.00

ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51


Consensus pattern (2 bp):   
TA

Done.