Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004850.1 Kokia drynarioides strain JFW-HI SEQ_118510, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3597
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31


Found at i:1018 original size:144 final size:144

Alignment explanation


    Indices: 768--1922  Score: 1481
    Period size: 144  Copynumber: 8.0  Consensus size: 144

        758 TTTGACATGA

                      *              **         *      *   *   *  * *        
        768 AAGCCTATTGAAGGATAGATCCAATTTAACCAAATTTGTTAGTGTCCAAATTTCATGTGGAATGG
          1 AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG

             *  * *         *   *      **   * ***            *    *          
        833 ATCCGTTAAGTTGGTTTCTTTGAAGGATTAACAACTTAAGATTGGTTAATTTGCCGACAGAAGAT
         66 AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT

                          
        898 GGGATTGGACCAAC
        131 GGGATTGGACCAAC

                      *              *           *                           
        912 AAGCCTATTGGAGGATAGATCCAATTCAACCAAATTCCTTAGTCTCCCAATATCTTCTGGAATGG
          1 AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG

                                *          *    *                            
        977 AACCATCAAGTTGGTTGCTTTGAAGGAACAAGGAGGGAAGATTGGTTAAGTTGCTGACAGAAGAT
         66 AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT

                         *  
       1042 GGGA-TGTGACCTGA-
        131 GGGATTG-GACC-AAC

               *      *       * *                *                           
       1056 AAGGCTATTGGAGGATAGGTTCAATACAACCAAATTCTTTAGTCTCCCAATATCTTCTGGAATGG
          1 AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG

                        *   *    *    *                                      
       1121 AACCATCAAGTTCGTTTCTTCCAAGGTACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
         66 AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT

                          
       1186 GGGATTGGACCAAC
        131 GGGATTGGACCAAC

                                     *                                       
       1200 AAGCCTATTGTAGGATAGATCCAATCCAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG
          1 AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG

                                       *                                     
       1265 AACCATCAAGTTGGTTGCTTCGAAGGACCAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
         66 AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT

                    *     
       1330 GGGATTGGTCCAAC
        131 GGGATTGGACCAAC

               *  *    **  *         *                                *      
       1344 AAGACTGTTGTTTGAGAGATCCAATCCAACCAAATTCGTTAGTCTCCCAATATCTTCTAGAATGG
          1 AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG

                  *    *        *          *   *    *                    *   
       1409 AACCATTAAGTCGGTTGCTTTGAAGGAACAAGGAGTCAAGCTTGGTTAAGTTGCTGACAGATGAT
         66 AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT

                         *  
       1474 GGGA-TGTGACCTGA-
        131 GGGATTG-GACC-AAC

               **     *        *     *           * *                         
       1488 AAGATTATTGAAGGATAGAGCCAATTCAACCAAATTCCTCAGTCTCCCAATATCTTCTGGAATGG
          1 AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG

             *    *     *  *    *                        *                   
       1553 ATCCATTAAGTTTGTCGCTTTGAAGGAACAACGAGGCAAGATTGGATAAGTTGCTGACAGAAGAT
         66 AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT

                          
       1618 GGGATTGGACCAAC
        131 GGGATTGGACCAAC

                              *                  *                           
       1632 AAGCCTATTGTAGGATAGGTCCAATACAACCAAATTCTTTAGTCTCCCAATATCTTCTGGAATGG
          1 AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG

                        *   *      *  *                                      
       1697 AACCATCAAGTTCGTTTCTTCGATGGTACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
         66 AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT

                          
       1762 GGGATTGGACCAAC
        131 GGGATTGGACCAAC

              *               *                 **                           
       1776 AATCCTATTGTAGGATAGGTCCAATACAACCAAATTATTTAGTCTCCCAATATCTTCTGGAATGG
          1 AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG

                        *   *    *    *                       *              
       1841 AACCATCAAGTTCGTTTCTTCCAAGGTACAACGAGGCAAGATTGGTTAAGCTGCTGACAGAAGAT
         66 AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT

                    *     
       1906 GGGATTGGTCCAAC
        131 GGGATTGGACCAAC

               
       1920 AAG
          1 AAG

       1923 ACTGTTGTTT


Statistics
Matches: 894,  Mismatches: 109, Indels: 16
        0.88            0.11        0.02

Matches are distributed among these distances:
 143    6  0.01
 144  882  0.99
 145    6  0.01

ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Consensus pattern (144 bp):   
AAGCCTATTGTAGGATAGATCCAATACAACCAAATTCGTTAGTCTCCCAATATCTTCTGGAATGG
AACCATCAAGTTGGTTGCTTCGAAGGAACAACGAGGCAAGATTGGTTAAGTTGCTGACAGAAGAT
GGGATTGGACCAAC

Done.