Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004858.1 Kokia drynarioides strain JFW-HI SEQ_118521, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3555
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.38


Found at i:670 original size:20 final size:21

Alignment explanation


    Indices: 632--670  Score: 62
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        622 TTTAAAAAAA

                                 
        632 AAATAAATTAAAGTTATTTAC
          1 AAATAAATTAAAGTTATTTAC

                 *             
        653 AAATAGATTAAA-TTATTT
          1 AAATAAATTAAAGTTATTT

        671 GTTTAAGTGT


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    6  0.35
  21   11  0.65

ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41


Consensus pattern (21 bp):   
AAATAAATTAAAGTTATTTAC
Done.