Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004860.1 Kokia drynarioides strain JFW-HI SEQ_118525, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 658

Length: 1098
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38


Found at i:53 original size:18 final size:17

Alignment explanation


    Indices: 22--67  Score: 58
    Period size: 18  Copynumber: 2.7  Consensus size: 17

         12 TTGACTTGCC

                            *
         22 TTTA-TTATTAATTATG
          1 TTTATTTATTAATTATA

                       *      
         38 TTTATTGTATTTATTATA
          1 TTTATT-TATTAATTATA

                        
         56 TTTATTTATTAA
          1 TTTATTTATTAA

         68 AACGTTTAGT


Statistics
Matches: 25,  Mismatches: 3, Indels: 3
        0.81            0.10        0.10

Matches are distributed among these distances:
  16    4  0.16
  17    6  0.24
  18   15  0.60

ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65


Consensus pattern (17 bp):   
TTTATTTATTAATTATA
Done.