Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004865.1 Kokia drynarioides strain JFW-HI SEQ_118532, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22752
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33


Found at i:14276 original size:97 final size:97

Alignment explanation


    Indices: 14110--14302  Score: 386
    Period size: 97  Copynumber: 2.0  Consensus size: 97

      14100 CAGAATGACA

                                                                             
      14110 CCCAGTGCCTCATCGGATAGTTTGAAGCAATAAAGTGACACCAGTGTCTCATTGGCTTAGTCAAA
          1 CCCAGTGCCTCATCGGATAGTTTGAAGCAATAAAGTGACACCAGTGTCTCATTGGCTTAGTCAAA

                                            
      14175 GTAAAGTGGTACCTAGTACCTCATCGAATCTT
         66 GTAAAGTGGTACCTAGTACCTCATCGAATCTT

                                                                             
      14207 CCCAGTGCCTCATCGGATAGTTTGAAGCAATAAAGTGACACCAGTGTCTCATTGGCTTAGTCAAA
          1 CCCAGTGCCTCATCGGATAGTTTGAAGCAATAAAGTGACACCAGTGTCTCATTGGCTTAGTCAAA

                                           
      14272 GTAAAGTGGTACCTAGTACCTCATCGAATCT
         66 GTAAAGTGGTACCTAGTACCTCATCGAATCT

      14303 ATCCAAAGTA


Statistics
Matches: 96,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  97   96  1.00

ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27


Consensus pattern (97 bp):   
CCCAGTGCCTCATCGGATAGTTTGAAGCAATAAAGTGACACCAGTGTCTCATTGGCTTAGTCAAA
GTAAAGTGGTACCTAGTACCTCATCGAATCTT

Found at i:21094 original size:22 final size:23

Alignment explanation


    Indices: 21046--21097  Score: 79
    Period size: 23  Copynumber: 2.3  Consensus size: 23

      21036 ATCTTAGCGC

                            *      
      21046 GCTCTCCGTTTAGCACTTTGTGT
          1 GCTCTCCGTTTAGCACGTTGTGT

                         *         
      21069 GCTCTCCGTTTAGTACGTT-TGT
          1 GCTCTCCGTTTAGCACGTTGTGT

                   
      21091 GCTCTCC
          1 GCTCTCC

      21098 ATACATTTGT


Statistics
Matches: 27,  Mismatches: 2, Indels: 1
        0.90            0.07        0.03

Matches are distributed among these distances:
  22   10  0.37
  23   17  0.63

ACGTcount: A:0.08, C:0.29, G:0.21, T:0.42


Consensus pattern (23 bp):   
GCTCTCCGTTTAGCACGTTGTGT
Done.