genome.fa.s4867.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004867.1 Kokia drynarioides strain JFW-HI SEQ_118535, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63157

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1479--1539	29	2.1	29	82	11	72	52	1	1	44	1.20
7904--7961	30	1.9	30	82	6	73	32	1	3	62	1.22
10796--10855	29	2.1	29	96	0	111	43	13	18	25	1.86
12116--12322	109	1.9	108	89	4	317	41	16	10	31	1.82
12889--12954	27	2.4	27	80	12	64	65	12	6	16	1.45
14384--14421	20	2.0	20	85	14	55	18	5	31	44	1.72
15096--15129	17	1.9	18	88	5	52	47	23	11	17	1.81
15408--15456	22	2.2	22	92	0	80	44	14	14	26	1.83
15415--15458	22	2.0	22	100	0	88	45	13	13	27	1.81
15999--16037	7	5.6	7	87	0	51	33	25	23	17	1.96
15998--16037	21	1.9	21	89	0	62	35	25	22	17	1.95
16080--16114	16	2.2	16	95	5	63	2	11	34	51	1.53
19524--19569	22	2.1	22	100	0	92	39	17	4	39	1.69
19750--19816	22	3.0	21	78	8	71	22	19	32	25	1.97
19763--19816	11	4.9	11	74	0	54	24	18	31	25	1.97
19838--19872	16	2.2	16	90	5	54	8	8	34	48	1.64
23695--23769	26	2.9	26	91	0	114	37	24	16	22	1.93
29225--29461	52	4.6	52	85	4	291	27	14	22	35	1.93
32032--32257	52	4.4	52	87	3	303	37	22	14	26	1.92
32032--32269	103	2.3	104	88	2	336	36	22	13	26	1.92
37282--37328	21	2.2	21	88	0	76	27	6	12	53	1.63
37818--37887	29	2.3	29	82	4	77	31	5	17	45	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37839--37898	29	2.1	29	84	6	77	26	5	18	50	1.67
42906--43019	57	2.0	57	98	0	219	47	9	7	35	1.64
46863--46927	31	2.0	33	85	5	89	35	9	0	55	1.32
47096--47143	19	2.6	18	83	3	60	56	2	0	41	1.11
47700--47843	71	2.0	72	83	1	182	26	25	14	34	1.94
48386--48472	24	3.6	24	84	0	102	24	21	12	41	1.88
48699--48728	10	3.0	10	95	0	51	46	30	0	23	1.52
53282--53394	60	1.9	60	88	3	174	45	13	18	23	1.84
54314--54340	12	2.2	12	100	0	54	37	33	7	22	1.82
56116--56271	25	6.2	26	82	5	115	32	21	17	27	1.96
56134--56273	25	5.6	25	81	5	133	32	22	17	27	1.97
56134--56273	50	2.8	49	82	4	163	32	22	17	27	1.97
56292--56471	28	6.5	28	77	6	179	30	28	16	24	1.96
56350--56465	54	2.1	54	83	3	151	29	29	17	24	1.97
56809--56833	12	2.1	12	100	0	50	48	20	0	32	1.50
61307--61369	25	2.5	25	89	2	90	36	25	12	25	1.91
61389--61515	28	4.5	28	85	3	148	33	27	16	22	1.96

Tables:   1

The End!