Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004873.1 Kokia drynarioides strain JFW-HI SEQ_118546, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2684
ACGTcount: A:0.37, C:0.14, G:0.13, T:0.36


Found at i:721 original size:29 final size:29

Alignment explanation


    Indices: 689--744  Score: 78
    Period size: 29  Copynumber: 1.9  Consensus size: 29

        679 AACCTTTCAA

                                          
        689 AGTGCTCAAATAAAG-GCCAAAATTTTTTG
          1 AGTGCTCAAA-AAAGAGCCAAAATTTTTTG

                      *          *     
        718 AGTGCTCAAACAAGAGCCAAACTTTTT
          1 AGTGCTCAAAAAAGAGCCAAAATTTTT

        745 CGAAAGTGCT


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  28    3  0.12
  29   21  0.88

ACGTcount: A:0.38, C:0.18, G:0.16, T:0.29


Consensus pattern (29 bp):   
AGTGCTCAAAAAAGAGCCAAAATTTTTTG
Done.