genome.fa.s4876.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01004876.1 Kokia drynarioides strain JFW-HI SEQ_118552, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49817

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1970	198	10.0	198	90	0	3080	38	17	25	19	1.92
2617--2698	35	2.3	35	87	4	121	42	0	2	54	1.13
2617--2710	6	16.2	6	71	18	74	43	1	2	53	1.19
2617--2710	17	5.4	17	82	8	118	43	1	2	53	1.19
2617--2710	35	2.7	34	82	12	111	43	1	2	53	1.19
3264--3311	23	2.1	22	92	3	78	39	2	0	58	1.10
4374--4581	29	7.1	28	77	9	150	32	23	3	40	1.73
4595--4768	30	5.9	30	76	9	162	31	23	3	41	1.71
4606--4798	59	3.2	59	82	8	239	32	24	3	39	1.71
4773--4862	30	3.0	30	70	13	78	35	32	4	27	1.77
4784--4878	29	3.2	29	71	14	95	37	25	6	30	1.81
4754--4916	59	2.8	57	80	5	182	34	25	4	34	1.77
4607--4917	118	2.6	119	79	10	291	32	25	4	37	1.77
12280--12361	35	2.3	35	87	4	121	42	0	2	54	1.13
12280--12373	6	16.2	6	71	18	74	43	1	2	53	1.19
12280--12373	17	5.4	17	82	8	118	43	1	2	53	1.19
12280--12373	35	2.7	34	82	12	111	43	1	2	53	1.19
12927--12974	23	2.1	22	92	3	78	39	2	0	58	1.10
14037--14244	29	7.1	28	77	9	150	32	23	3	40	1.73
14258--14431	30	5.9	30	76	9	162	31	23	3	41	1.71
14269--14461	59	3.2	59	82	8	239	32	24	3	39	1.71
14436--14525	30	3.0	30	70	13	78	35	32	4	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14447--14541	29	3.2	29	71	14	95	37	25	6	30	1.81
14417--14579	59	2.8	57	80	5	182	34	25	4	34	1.77
14270--14580	118	2.6	119	79	10	291	32	25	4	37	1.77
22412--22458	24	2.0	24	91	4	78	38	0	0	61	0.96
22401--22458	12	5.1	12	79	10	68	36	0	0	63	0.94
24216--24277	26	2.3	26	81	13	81	59	11	4	24	1.51
33522--33564	16	2.8	16	93	6	72	65	0	11	23	1.25
41964--42245	144	2.0	145	94	0	494	31	16	24	26	1.96
41962--42299	144	2.3	144	85	4	396	32	18	23	26	1.97
42817--42860	22	2.0	23	95	4	81	43	0	0	56	0.99
47135--47221	31	2.9	29	82	5	84	47	12	6	33	1.68
48994--49044	23	2.1	23	82	7	57	33	5	23	37	1.79

Tables:   1

The End!