Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01004883.1 Kokia drynarioides strain JFW-HI SEQ_118562, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3903
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.37


Found at i:1064 original size:21 final size:20

Alignment explanation


    Indices: 1026--1064  Score: 51
    Period size: 20  Copynumber: 1.9  Consensus size: 20

       1016 GTTTTTAAGC

                *        *      
       1026 AAAAGTATCGATATTTTACG
          1 AAAAATATCGATACTTTACG

                               
       1046 AAAAATATCGATACCTTTA
          1 AAAAATATCGATA-CTTTA

       1065 AAAAGGTATT


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20   12  0.75
  21    4  0.25

ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33


Consensus pattern (20 bp):   
AAAAATATCGATACTTTACG

Found at i:3850 original size:15 final size:16

Alignment explanation


    Indices: 3828--3870  Score: 65
    Period size: 14  Copynumber: 2.9  Consensus size: 16

       3818 ATTTATTTTC

                            
       3828 TATTATATTTTAATAA
          1 TATTATATTTTAATAA

                            
       3844 T-TTATA-TTTAA-AA
          1 TATTATATTTTAATAA

                          
       3857 TATTATATTTTAAT
          1 TATTATATTTTAAT

       3871 CACTAAATTA


Statistics
Matches: 24,  Mismatches: 0, Indels: 6
        0.80            0.00        0.20

Matches are distributed among these distances:
  13    3  0.12
  14   10  0.42
  15   10  0.42
  16    1  0.04

ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58


Consensus pattern (16 bp):   
TATTATATTTTAATAA

Done.